Gene: AT3G53460

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G53460
  • Transcript Identifier AT3G53460.1
  • Gene Type Coding gene
  • Location Chr3 : 19819738-19821423 : negative

Gene Family Information

  • ID HOM05D000142
  • #Genes/#Species 2580/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G53460.1
  • symbol CP29
  • uniprot Q43349

Descriptions

  • Description chloroplast RNA-binding protein 29
  • Computational description chloroplast RNA-binding protein 29 (CP29); FUNCTIONS IN: RNA binding, poly(U) RNA binding; LOCATED IN: thylakoid, chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G37220.1); Has 992946 Blast hits to 485878 proteins in 21699 species: Archae - 20986; Bacteria - 587269; Metazoa - 197754; Fungi - 28530; Plants - 64033; Viruses - 69323; Other Eukaryotes - 25051 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1901259
IBA
GOA Databasechloroplast rRNA processing
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0009409
IMP
Gene Ontologyresponse to cold1
GO:0043489
IMP
Gene OntologyRNA stabilization2
GO:0009631
IMP
Gene Ontologycold acclimation2
GO:0008380
IMP
Gene OntologyRNA splicing2
GO:0006396
IMP
Gene OntologyRNA processing2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IBA
GOA DatabasemRNA binding
GO:0003729
IDA, HDA
Gene OntologymRNA binding3 4
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IDA
ISS
Gene OntologyRNA binding2 5
GO:0008266
IDA
Gene Ontologypoly(U) RNA binding6

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009535
IBA
GOA Databasechloroplast thylakoid membrane
GO:0009536
IEA
GOA Databaseplastid
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA, HDA
ISM
Gene Ontologychloroplast5 7
GO:0005829
HDA
Gene Ontologycytosol8
GO:0009570
IDA, HDA
Gene Ontologychloroplast stroma2 9
GO:0009534
HDA
Gene Ontologychloroplast thylakoid10
GO:0009579
IDA, HDA
Gene Ontologythylakoid11 12

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
Mapman id Description
16.11.2.1 RNA processing.organelle machinery.plastidial mRNA stabilisation.ribonucleoprotein (CP29)