Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0036592 hypothetical protein CICLE_v10010260mg [Citrus clementina] Chr7 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG10G320 LG-10 - View
Acer truncatum Atru.chr2.3696 chr2 - View
Actinidia chinensis Actinidia04999 Lachesis_group19 + View
Actinidia chinensis Actinidia30396 Lachesis_group10 - View
Arabidopsis lyrata AL1G64000 scaffold_1 + View
Avicennia marina MSTRG.13022 ScioBoG_17730_HRSCAF_17811 - View
Avicennia marina MSTRG.15797 ScioBoG_19538_HRSCAF_19626 - View
Amaranthus hybridus Ah.04g166610 Probable ribosomal RNA small subunit methyltransferase B (EC 2.1.1.176) (16S rRNA m5C967 methyltransferase) (rRNA (cytosine-C(5)-)-methyltransferase RsmB) AmaHy_arrow1_Scaffold_4 - View
Aquilegia oxysepala Aqoxy1G04266 CHR01 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.IH99E4 K01148 - poly(A)-specific ribonuclease (PARN) arahy.Tifrunner.gnm1.Arahy.01 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.I0JGGQ K01148 - poly(A)-specific ribonuclease (PARN) arahy.Tifrunner.gnm1.Arahy.11 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.AFR4D1 PF01029//PF01189 - NusB family (NusB) // 16S rRNA methyltransferase RsmF (Nol1_Nop2_Fmu) arahy.Tifrunner.gnm1.Arahy.07 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.HGG2PG K03500 - 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] (rsmB, sun) arahy.Tifrunner.gnm1.Arahy.17 + View
Arabidopsis thaliana AT1G55870 Polynucleotidyl transferase, ribonuclease H-like superfamily protein Encodes a poly(A)-specific ribonuclease%2C AtPARN. Expression of AtPARN is upregulated by ABA or stress treatment. Mutant is hypersensitivity to salicylic acid as well as ABA. ABA-HYPERSENSITIVE GERMINATION 2 (AHG2)%3B FUNCTIONS IN: ribonuclease activity%2C nucleic acid binding%3B INVOLVED IN: response to abscisic acid stimulus%2C RNA modification%2C response to stress%2C response to salicylic acid stimulus%3B LOCATED IN: nucleus%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941)%2C Polynucleotidyl transferase%2C ribonuclease H fold (InterPro:IPR012337)%3B BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein (TAIR:AT3G25430.1)%3B Has 452 Blast hits to 437 proteins in 136 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 226%3B Fungi - 62%3B Plants - 74%3B Viruses - 0%3B Other Eukaryotes - 90 (source: NCBI BLink). Chr1 + View
Beta vulgaris EL10Ac4g07557 K03500 - 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] (rsmB, sun) Chr4_EL10_PGA_scaffold1 + View
Capsicum annuum CAN.G623.15 PGAv.1.6.scaffold623 - View
Cannabis sativa CANSAT11G0717 NC_044377.1 + View
Cicer arietinum L. Ca_06399_v3 Ca_LG2_v3 - View
Corylus avellana Haze_09831 Similar to NOP2A: 25S rRNA (cytosine-C(5))-methyltransferase NOP2A (Arabidopsis thaliana OX%3D3702) 4 - View
Coffea canephora Cc05_g14990 Poly(A)-specific ribonuclease PARN chr5 - View
Citrus clementina Ciclev10007611m.g scaffold_1 - View
Carpinus fangiana Cfa020185 Cfa08 + View
Carya illinoinensis CiPaw.12G138600 K03500 - 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] (rsmB, sun) Chr12 - View
Citrullus lanatus ClCG10G004430 Poly(A)-specific ribonuclease PARN CG_Chr10 + View
Cucumis melo MELO3C014116.2 poly(A)-specific ribonuclease PARN chr06 + View
Corchorus olitorius COL.COLO4_09841 Ribonuclease CAF1 AWUE01014274.1 - View
Carica papaya Cpa.g.sc12.117 supercontig_12 - View
Chenopodium quinoa AUR62017111 PARN: Poly(A)-specific ribonuclease PARN C_Quinoa_Scaffold_3787 - View
Chenopodium quinoa AUR62036464 PARN: Poly(A)-specific ribonuclease PARN C_Quinoa_Scaffold_2080 - View
Capsella rubella Carub.0001s4445 PTHR15092//PTHR15092:SF22 - POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 // TARGET OF EGR1 PROTEIN 1 scaffold_1 + View
Cucumis sativus L. CsaV3_3G004220 poly(A)-specific ribonuclease PARN chr3 + View
Daucus carota DCAR_017078 hypothetical protein DCARv2_Chr5 + View
Davidia involucrata Dinv10340 GWHABJS00000001 - View
Durio zibethinus Duzib268G0190 NW_019168270.1 + View
Erigeron canadensis ECA236G0853 Conyza_canadensis_scaffold:3 - View
Eucalyptus grandis Eucgr.F03687 Chr06 + View
Eucalyptus grandis Eucgr.F02044 Chr06 + View
Erythranthe guttata Migut.M01648 scaffold_13 + View
Erythranthe guttata Migut.H01753 scaffold_8 + View
Eutrema salsugineum Thhalv10011283m.g PTHR15092:SF22 - TARGET OF EGR1 PROTEIN 1 scaffold_7 - View
Fragaria x ananassa FAN21G0812 K03500 - 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] (rsmB, sun) Fvb3-2 + View
Fragaria x ananassa FAN25G1954 K01148 - poly(A)-specific ribonuclease (PARN) Fvb3-1 - View
Fragaria x ananassa FAN11G2991 K03500 - 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] (rsmB, sun) Fvb3-4 + View
Fragaria x ananassa FAN16G2293 2.1.1.176 - 16S rRNA (cytosine(967)-C(5))-methyltransferase Fvb3-3 + View
Fragaria vesca FvH4_3g42960 K03500 - 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] (rsmB, sun) Fvb3 + View
Gossypium hirsutum Gohir.A01G091900 K01148 - poly(A)-specific ribonuclease (PARN) A01 - View
Gossypium hirsutum Gohir.D01G062100 K01148 - poly(A)-specific ribonuclease (PARN) D01 - View
Glycine max Glyma.08G330300 K01148 - poly(A)-specific ribonuclease (PARN) Gm08 - View
Glycine max Glyma.02G301000 K03500 - 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] (rsmB, sun) Gm02 - View
Glycine max Glyma.14G013102 K03500 - 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] (rsmB, sun) Gm14 + View
Glycine max Glyma.18G076100 K01148 - poly(A)-specific ribonuclease (PARN) Gm18 + View
Gossypium raimondii Gorai.002G100700 Chr02 - View
Helianthus annuus HanXRQChr11g0334101 Probable polynucleotidyl transferase, ribonuclease H-like superfamily protein HanXRQChr11 - View
Hydrangea macrophylla Hma1.2p1_1094F.1_g256485 Hma1.2p1_1094F.1 + View
Lupinus albus Lalb_Chr15g0082171 PTHR15092:SF22 - TARGET OF EGR1 PROTEIN 1 Lalb_Chr15 - View
Lupinus albus Lalb_Chr10g0107431 K03500 - 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] (rsmB, sun) Lalb_Chr10 - View
Lotus japonicus Lj6g0025052 PTHR15092:SF22 - TARGET OF EGR1 PROTEIN 1 chr6 + View
Lotus japonicus LjContig00081g0019548 K03500 - 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] (rsmB, sun) Contig00081 + View
Lonicera japonica Lj1A891G67 GWHAAZE00000001 - View
Lonicera japonica Lj8C179G13 GWHAAZE00000008 - View
Malus domestica MD11G1030900 Polynucleotidyl transferase Chr11 - View
Malus domestica MD03G1026800 Polynucleotidyl transferase Chr03 - View
Manihot esculenta Manes.03G141900 Chromosome03 - View
Manihot esculenta Manes.15G059300 Chromosome15 + View
Medicago truncatula Medtr5g096020 ribosomal RNA small subunit methyltransferase B chr5 - View
Medicago truncatula Medtr5g095140 ribosomal RNA small subunit methyltransferase B, putative chr5 + View
Nicotiana tabacum Nitab4.5_0000163g0170 NusB/RsmB/TIM44, RNA (C5-cytosine) methyltransferase, putative Rsm-related, plant, RNA (C5-cytosine) methyltransferase, Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p Nitab4.5_0000163 + View
Nicotiana tabacum Nitab4.5_0002736g0010 Ribonuclease CAF1, Ribonuclease H-like domain Nitab4.5_0002736 + View
Olea europaea Oeu049406.1 chr6 + View
Petunia axillaris Peaxi162Scf00006g00319 Ribosomal RNA small subunit methyltransferase B Peaxi162Scf00006 - View
Petunia axillaris Peaxi162Scf00139g01315 Poly(A)-specific ribonuclease PARN Peaxi162Scf00139 + View
Punica granatum PGR031G2084 NC_045127.1 + View
Punica granatum PGR083G1098 NC_045133.1 + View
Prunus persica Prupe.6G024200 Pp06 - View
Pisum sativum Psat2g007080 16S rRNA methyltransferase RsmB/F chr2LG1 + View
Papaver somniferum PSO541G6316 NC_039363.1 + View
Papaver somniferum PSO675G5997 NC_039358.1 + View
Populus trichocarpa Potri.001G368401 PTHR15092//PTHR15092:SF22 - POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 // TARGET OF EGR1 PROTEIN 1 Chr01 - View
Phaseolus vulgaris Phvul.008G279400 K03500 - 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] (rsmB, sun) Chr08 - View
Phaseolus vulgaris Phvul.006G058000 Chr06 - View
Quercus lobata QL08p003952 8 + View
Rosa chinensis RcHm_v2.0_Chr5g0077011 RcHm_v2.0_Chr5 + View
Rhododendron simsii Rhsim06G0230400 chr06 - View
Striga asiatica SGA_v2.0_scaffold168G38565 scaffold168 - View
Salvia bowleyana SalBow8G2422 GWHASIU00000004 + View
Salix brachista Sabra16G0241500 GWHAAZH00000016 - View
Simmondsia chinensis Sc03g0011370 GWHAASQ00000003 - View
Simmondsia chinensis Sc16g0008120 GWHAASQ00000016 - View
Sechium edule Sed0006389 LG03 - View
Solanum lycopersicum Solyc07g065620.4 Poly(A)-specific ribonuclease PARN (AHRD V3.3 *** A0A2G2WFF7_CAPBA) SL4.0ch07 - View
Solanum lycopersicum Solyc12g015710.2 16S rRNA (Cytosine967-C5)-methyltransferase (AHRD V3.3 *** A0A2I0W381_9ASPA) SL4.0ch12 - View
Schrenkiella parvula Sp1g41470 PTHR15092//PTHR15092:SF22 - POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 // TARGET OF EGR1 PROTEIN 1 ch1-2 + View
Solanum pennellii Sopen12g007630 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein | FUNCTIONS IN: RNA binding | INVOLVED IN: regulation of transcription, DNA-dependent | LOCATED IN: chloroplast | EXPRESSED IN: 19 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p , NusB/RsmB/TIM44 | BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Spenn-ch12 - View
Solanum pennellii Sopen07g033830 Encodes a poly(A)-specific ribonuclease, AtPARN. Expression of AtPARN is upregulated by ABA or stress treatment. Mutant is hypersensitivity to salicylic acid as well as ABA. | ABA-HYPERSENSITIVE GERMINATION 2 (AHG2) | FUNCTIONS IN: ribonuclease activity, nucleic acid binding | INVOLVED IN: response to abscisic acid stimulus, RNA modification, response to stress, response to salicylic acid stimulus | LOCATED IN: nucleus | EXPRESSED IN: 10 plant structures | EXPRESSED DURING: 6 growth stages | CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 , Polynucleotidyl transferase, ribonuclease H fold | BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein Spenn-ch07 - View
Solanum tuberosum PGSC0003DMG402029795 Ribosomal RNA small subunit methyltransferase B ST4.03ch12 - View
Solanum tuberosum PGSC0003DMG400022169 Poly(A)-specific ribonuclease PARN ST4.03ch07 - View
Selenicereus undatus Hund01886 Scaffold_33678 + View
Trochodendron aralioides TAR629G2623 group0 + View
Theobroma cacao Thecc.07G012400 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein Chromosome_7 + View
Tarenaya hassleriana THA.LOC104822731 poly(A)-specific ribonuclease PARN isoform X1 NW_010966725.1 + View
Tarenaya hassleriana THA.LOC104815694 uncharacterized protein LOC104815694 NW_010965696.1 + View
Trifolium pratense TPR.G24133 Tp57577_TGAC_v2_LG4 - View
Trifolium pratense TPR.G8601 Tp57577_TGAC_v2_LG4 + View
Tripterygium wilfordii TWI39G0509 NC_052250.1 + View
Vaccinium macrocarpon vmacro11596 Similar to rsmB: Probable ribosomal RNA small subunit methyltransferase B (Bacillus subtilis (strain 168) OX%3D224308) chr11_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0647G0703 CM024073.1 - View
Vigna mungo VMungo0540G2248 CM024075.1 + View
Vitis vinifera GSVIVG01014694001 chr19 - View