Gene: Solyc07g065620.4
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc07g065620.4
- Transcript Identifier Solyc07g065620.4.1
- Gene Type Coding gene
- Location SL4.0ch07 : 67158101-67162669 : negative
Gene Family Information
- ID HOM05D001724
- #Genes/#Species 375/100
- Phylogenetic origin
- ID ORTHO05D002973
- #Genes/#Species 251/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc07g065620.4.1
- uniprot A0A3Q7HG19
- gene_id Solyc07g065620
Descriptions
- Description Poly(A)-specific ribonuclease PARN (AHRD V3.3 *** A0A2G2WFF7_CAPBA)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0090305 | IEA | GOA Database | nucleic acid phosphodiester bond hydrolysis | |
GO:0090503 | IEA | GOA Database | RNA phosphodiester bond hydrolysis, exonucleolytic | |
GO:0009737 | ISO | PLAZA Integrative Orthology | response to abscisic acid | AT1G55870 |
GO:0009651 | ISO | PLAZA Integrative Orthology | response to salt stress | AT1G55870 |
GO:0006970 | ISO | PLAZA Integrative Orthology | response to osmotic stress | AT1G55870 |
GO:0009751 | ISO | PLAZA Integrative Orthology | response to salicylic acid | AT1G55870 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0003676 | IEA | GOA Database | nucleic acid binding | |
GO:0003676 | IEA | InterPro | nucleic acid binding | |
GO:0004527 | IEA | GOA Database | exonuclease activity | |
GO:0004518 | IEA | GOA Database | nuclease activity | |
GO:0003723 | IBA | GOA Database | RNA binding | |
GO:0000175 | IBA | GOA Database | 3'-5'-exoribonuclease activity |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005737 | IBA | GOA Database | cytoplasm | |
GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT1G55870 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
16.4.2.1.1 | RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.poly(A)-specific ribonuclease (PARN) |