Gene: Solyc12g015710.2

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc12g015710.2
  • Transcript Identifier Solyc12g015710.2.1
  • Gene Type Coding gene
  • Location SL4.0ch12 : 5715620-5723579 : negative

Gene Family Information

  • ID HOM05D001724
  • #Genes/#Species 375/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc12g015710.2.1
  • uniprot A0A3Q7J5N3
  • gene_id Solyc12g015710

Descriptions

  • Description 16S rRNA (Cytosine967-C5)-methyltransferase (AHRD V3.3 *** A0A2I0W381_9ASPA)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0001510
IBA
IEA
GOA DatabaseRNA methylation
GO:0001510
IEA
InterProRNA methylation
GO:0000470
IBA
GOA Databasematuration of LSU-rRNA
GO:0070475
IBA
GOA DatabaserRNA base methylation
GO:0006364
IEA
GOA DatabaserRNA processing
GO:0006364
IEA
InterProrRNA processing
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0032259
IEA
GOA Databasemethylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008168
IEA
GOA Databasemethyltransferase activity
GO:0008168
IEA
InterPromethyltransferase activity
GO:0003676
ISO
PLAZA Homology (enrichment)nucleic acid binding HOM05D001724
GO:0009383
IBA
GOA DatabaserRNA (cytosine-C5-)-methyltransferase activity
GO:0008649
IEA
GOA DatabaserRNA methyltransferase activity
GO:0008649
IEA
InterProrRNA methyltransferase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005730
IBA
GOA Databasenucleolus
GO:0005737
IEA
GOA Databasecytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR023267 RNA (C5-cytosine) methyltransferase
IPR035926 NusB-like superfamily
IPR004573 rRNA small subunit methyltransferase B
IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type
IPR023268 RNA (C5-cytosine) methyltransferase, putative Rsm-related, plant
IPR029063 S-adenosyl-L-methionine-dependent methyltransferase
IPR006027 NusB/RsmB/TIM44
Mapman id Description
35.1 not assigned.annotated