Gene: Sopen07g033830
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen07g033830
- Transcript Identifier Sopen07g033830.1
- Gene Type Coding gene
- Location Spenn-ch07 : 78522209-78526780 : negative
Gene Family Information
- ID HOM05D001724
- #Genes/#Species 375/100
- Phylogenetic origin
- ID ORTHO05D002973
- #Genes/#Species 251/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen07g033830.1
Descriptions
- Description Encodes a poly(A)-specific ribonuclease, AtPARN. Expression of AtPARN is upregulated by ABA or stress treatment. Mutant is hypersensitivity to salicylic acid as well as ABA. | ABA-HYPERSENSITIVE GERMINATION 2 (AHG2) | FUNCTIONS IN: ribonuclease activity, nucleic acid binding | INVOLVED IN: response to abscisic acid stimulus, RNA modification, response to stress, response to salicylic acid stimulus | LOCATED IN: nucleus | EXPRESSED IN: 10 plant structures | EXPRESSED DURING: 6 growth stages | CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 , Polynucleotidyl transferase, ribonuclease H fold | BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009737 | ISO | PLAZA Integrative Orthology | response to abscisic acid | AT1G55870 |
| GO:0009651 | ISO | PLAZA Integrative Orthology | response to salt stress | AT1G55870 |
| GO:0006970 | ISO | PLAZA Integrative Orthology | response to osmotic stress | AT1G55870 |
| GO:0009751 | ISO | PLAZA Integrative Orthology | response to salicylic acid | AT1G55870 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT1G55870 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.4.2.1.1 | RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.poly(A)-specific ribonuclease (PARN) |