Paralogs (intra-species colinear regions)
No paralogous anchorpoints available
Orthologs (inter-species colinear regions)
| Organism | Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|---|
| Acer truncatum | Atru.chr7.2523 | chr7 | - | View | |
| Actinidia chinensis | Actinidia13197 | Lachesis_group18 | + | View | |
| Amaranthus hybridus | Ah.10g035570 | CHD3-type chromatin-remodeling factor PICKLE (EC 3.6.4.-) (Protein CHROMATIN REMODELING 6) (AtCHR6) (Protein GYMNOS) | AmaHy_arrow1_Scaffold_10 | + | View |
| Arachis hypogaea | arahy.Tifrunner.gnm1.ann1.QU94QB | K11643 - chromodomain-helicase-DNA-binding protein 4 (CHD4, MI2B) | arahy.Tifrunner.gnm1.Arahy.20 | - | View |
| Arabidopsis thaliana | AT2G25170 | chromatin remodeling factor CHD3 (PICKLE) Encodes a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD3 group. Involved in post-germination repression of embryonic development. Acts with GA to establish repression of embryonic genes upon germination. Protein preferentially accumulates in differentiating tissues. Loss of function alleles are associated with expression of embryonic traits in adult plants and derepression of embryonic genes such as PHEROS1. Is an extragenic suppressor of slr2 (SSL2). Mutations in PKL (SSL2) restores lateral root formation in the slr2 mutant slr-1. It was proposed that PKL/SSL2-mediated chromatin remodeling negatively regulates auxin-mediated LR formation in Arabidopsis. PICKLE (PKL)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C PHD-type%2C conserved site (InterPro:IPR019786)%2C Zinc finger%2C PHD-type (InterPro:IPR001965)%2C Protein of unknown function DUF1086 (InterPro:IPR009462)%2C Chromo domain (InterPro:IPR000953)%2C SNF2-related (InterPro:IPR000330)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C Chromo domain-like (InterPro:IPR016197)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Zinc finger%2C FYVE/PHD-type (InterPro:IPR011011)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C Zinc finger%2C PHD-finger (InterPro:IPR019787)%3B BEST Arabidopsis thaliana protein match is: chromatin remodeling factor%2C putative (TAIR:AT4G31900.1)%3B Has 20234 Blast hits to 17178 proteins in 1958 species: Archae - 161%3B Bacteria - 5176%3B Metazoa - 5098%3B Fungi - 4334%3B Plants - 1876%3B Viruses - 134%3B Other Eukaryotes - 3455 (source: NCBI BLink). | Chr2 | + | View |
| Arabidopsis thaliana | AT4G31900 | chromatin remodeling factor PICKLE RELATED 2 (PKR2)%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: chromatin assembly or disassembly%3B LOCATED IN: chromatin%2C nucleus%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463)%2C Protein of unknown function DUF1086 (InterPro:IPR009462)%2C Chromo domain (InterPro:IPR000953)%2C SNF2-related (InterPro:IPR000330)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C Chromo domain-like (InterPro:IPR016197)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%3B BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1)%3B Has 19383 Blast hits to 16625 proteins in 2121 species: Archae - 158%3B Bacteria - 5872%3B Metazoa - 3841%3B Fungi - 4162%3B Plants - 1629%3B Viruses - 186%3B Other Eukaryotes - 3535 (source: NCBI BLink). PICKLE RELATED 2 (PKR2)%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: chromatin assembly or disassembly%3B LOCATED IN: chromatin%2C nucleus%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C Protein of unknown function DUF1086 (InterPro:IPR009462)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%2C Chromo domain (InterPro:IPR000953)%2C SNF2-related (InterPro:IPR000330)%3B BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1). | Chr4 | + | View |
| Brassica carinata | BcaC09g51981 | ChrC09 | + | View | |
| Brassica napus | A01p06320 | A01 | - | View | |
| Brassica napus | C01p06980 | C01 | - | View | |
| Brassica oleracea | BolC1t00694H | C1 | - | View | |
| Beta vulgaris | EL10Ac2g04134 | K11643 - chromodomain-helicase-DNA-binding protein 4 (CHD4, MI2B) | Chr2_EL10_PGA_scaffold6 | + | View |
| Corylus avellana | Haze_21436 | Similar to PKL: CHD3-type chromatin-remodeling factor PICKLE (Arabidopsis thaliana OX%3D3702) | 3 | + | View |
| Citrus clementina | Ciclev10010331m.g | scaffold_1 | + | View | |
| Carya illinoinensis | CiPaw.08G007100 | K11643 - chromodomain-helicase-DNA-binding protein 4 (CHD4, MI2B) | Chr08 | + | View |
| Citrullus lanatus | ClCG05G016460 | Chromodomain helicase DNA binding protein, putative | CG_Chr05 | + | View |
| Cucumis melo | MELO3C016973.2 | CHD3-type chromatin-remodeling factor PICKLE | chr07 | - | View |
| Carica papaya | Cpa.g.sc127.15 | supercontig_127 | - | View | |
| Chenopodium quinoa | AUR62012463 | PKL: CHD3-type chromatin-remodeling factor PICKLE | C_Quinoa_Scaffold_1995 | - | View |
| Chenopodium quinoa | AUR62031587 | PKL: CHD3-type chromatin-remodeling factor PICKLE | C_Quinoa_Scaffold_1206 | - | View |
| Capsella rubella | Carub.0004s0475 | scaffold_4 | + | View | |
| Cucumis sativus L. | CsaV3_4G036700 | Chromodomain helicase DNA binding protein, putative | chr4 | + | View |
| Davidia involucrata | Dinv16472 | GWHABJS00000017 | - | View | |
| Durio zibethinus | Duzib187G0747 | NW_019167860.1 | - | View | |
| Erigeron canadensis | ECA240G3782 | Conyza_canadensis_scaffold:5 | - | View | |
| Eutrema salsugineum | Thhalv10027006m.g | K11643 - chromodomain-helicase-DNA-binding protein 4 (CHD4, MI2B) | scaffold_1 | - | View |
| Fragaria x ananassa | FAN20G0395 | PF00176//PF00385//PF00628 - SNF2 family N-terminal domain (SNF2_N) // Chromo (CHRromatin Organisation MOdifier) domain (Chromo) // PHD-finger (PHD) | Fvb2-3 | - | View |
| Fragaria x ananassa | FAN27G0005 | PTHR10799:SF741 - HELICASE PROTEIN MOM1-RELATED | Fvb2-1 | - | View |
| Fragaria x ananassa | FAN15G1888 | PTHR10799:SF741 - HELICASE PROTEIN MOM1-RELATED | Fvb2-4 | - | View |
| Glycine max | Glyma.17G217300 | PTHR10799:SF788 - CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN MI-2 HOMOLOG | Gm17 | - | View |
| Gossypium raimondii | Gorai.001G036900 | Chr01 | - | View | |
| Lupinus albus | Lalb_Chr23g0268291 | K11643 - chromodomain-helicase-DNA-binding protein 4 (CHD4, MI2B) | Lalb_Chr23 | + | View |
| Lupinus albus | Lalb_Chr22g0361401 | PF00271//PF00385//PF04851//PF06461//PF06465 - Helicase conserved C-terminal domain (Helicase_C) // Chromo (CHRromatin Organisation MOdifier) domain (Chromo) // Type III restriction enzyme, res subunit (ResIII) // Domain of Unknown Function (DUF1086) (DUF1086) // Domain of Unknown Function (DUF1087) (DUF1087) | Lalb_Chr22 | + | View |
| Lonicera japonica | Lj7A730T43 | GWHAAZE00000007 | - | View | |
| Malus domestica | MD15G1037700 | chromatin remodeling factor CHD3 (PICKLE) | Chr15 | - | View |
| Malus domestica | MD08G1058800 | chromatin remodeling factor CHD3 (PICKLE) | Chr08 | + | View |
| Manihot esculenta | Manes.03G010400 | Chromosome03 | + | View | |
| Manihot esculenta | Manes.16G127700 | Chromosome16 | - | View | |
| Medicago truncatula | Medtr3g106210 | CHD3-type chromatin-remodeling factor pickle protein | chr3 | + | View |
| Medicago truncatula | Medtr1g013190 | chromatin remodeling factor CHD3 (pickle) | chr1 | - | View |
| Nicotiana tabacum | Nitab4.5_0000486g0100 | Homeodomain-like, CHD, C-terminal 2 | Nitab4.5_0000486 | - | View |
| Nicotiana tabacum | Nitab4.5_0002503g0110 | CHD, C-terminal 2, SNF2-related, P-loop containing nucleoside triphosphate hydrolase, Zinc finger, PHD-finger, Helicase, superfamily 1/2, ATP-binding domain, Domain of unknown function DUF1086, Zinc finger, RING/FYVE/PHD-type, Chromo domain/shadow, Chromo domain-like, Zinc finger, PHD-type, Homeodomain-like, Zinc finger, FYVE/PHD-type, Chromo domain, Rubredoxin-like domain, Domain of unknown function DUF1087, Zinc finger, PHD-type, conserved site | Nitab4.5_0002503 | - | View |
| Olea europaea | Oeu056768.1 | chr13 | + | View | |
| Oryza sativa ssp. japonica | Os06g0183800 | Similar to Chromatin-remodeling factor CHD3. | chr06 | - | View |
| Petunia axillaris | Peaxi162Scf00430g00415 | Chromodomain-helicase-DNA-binding protein 4 | Peaxi162Scf00430 | - | View |
| Punica granatum | PGR044G1954 | NC_045134.1 | - | View | |
| Prunus persica | Prupe.1G391600 | K11643 - chromodomain-helicase-DNA-binding protein 4 (CHD4, MI2B) | Pp01 | - | View |
| Pisum sativum | Psat5g031880 | SNF2 family N-terminal domain | chr5LG3 | - | View |
| Populus trichocarpa | Potri.006G262200 | K11643 - chromodomain-helicase-DNA-binding protein 4 (CHD4, MI2B) | Chr06 | - | View |
| Populus trichocarpa | Potri.018G021100 | K11643 - chromodomain-helicase-DNA-binding protein 4 (CHD4, MI2B) | Chr18 | + | View |
| Phaseolus vulgaris | Phvul.001G046100 | K11643 - chromodomain-helicase-DNA-binding protein 4 (CHD4, MI2B) | Chr01 | + | View |
| Phaseolus vulgaris | Phvul.009G088700 | Chr09 | + | View | |
| Quercus lobata | QL02p019684 | CM012294 | + | View | |
| Rosa chinensis | RcHm_v2.0_Chr6g0299661 | RcHm_v2.0_Chr6 | + | View | |
| Rhododendron simsii | Rhsim07G0163100 | chr07 | - | View | |
| Salix brachista | Sabra18G0023400 | GWHAAZH00000018 | + | View | |
| Salix brachista | Sabra06G0204500 | GWHAAZH00000006 | - | View | |
| Sechium edule | Sed0022321 | LG05 | - | View | |
| Sechium edule | Sed0013682 | LG13 | + | View | |
| Solanum lycopersicum | Solyc06g065730.3 | CHD3-type chromatin-remodeling factor PICKLE (AHRD V3.3 *** A0A2G2ZAQ4_CAPAN) | SL4.0ch06 | + | View |
| Schrenkiella parvula | Sp7g29720 | K11643 - chromodomain-helicase-DNA-binding protein 4 (CHD4, MI2B) | ch7-5 | + | View |
| Solanum pennellii | Sopen06g024260 | Encodes a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD3 group. Involved in post-germination repression of embryonic development. Acts with GA to establish repression of embryonic genes upon germination. Protein preferentially accumulates in differentiating tissues. Loss of function alleles are associated with expression of embryonic traits in adult plants and derepression of embryonic genes such as PHEROS1. Is an extragenic suppressor of slr2 (SSL2). Mutations in PKL (SSL2) restores lateral root formation in the slr2 mutant slr-1. It was proposed that PKL/SSL2-mediated chromatin remodeling negatively regulates auxin-mediated LR formation in Arabidopsis. | PICKLE (PKL) | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 , Zinc finger, RING-type , Zinc finger, PHD-type, conserved site , Zinc finger, PHD-type , Protein of unknown function DUF1086 , Chromo domain , SNF2-related , DEAD-like helicase, N-terminal , Chromo domain-like , DNA/RNA helicase, C-terminal , Zinc finger, FYVE/PHD-type , Helicase, superfamily 1/2, ATP-binding domain , Zinc finger, PHD-finger | BEST Arabidopsis thaliana protein match is: chromatin remodeling factor, putative | Spenn-ch06 | + | View |
| Solanum tuberosum | PGSC0003DMG400026094 | Conserved gene of unknown function | ST4.03ch06 | - | View |
| Selenicereus undatus | Hund03464 | Scaffold_19641 | + | View | |
| Trochodendron aralioides | TAR625G0155 | group4 | + | View | |
| Theobroma cacao | Thecc.09G017400 | Chromatin remodeling factor CHD3 | Chromosome_9 | + | View |
| Trifolium pratense | TPR.G3131 | Tp57577_TGAC_v2_LG7 | - | View | |
| Tripterygium wilfordii | TWI63G1656 | NC_052240.1 | - | View | |
| Vaccinium macrocarpon | vmacro05139 | Similar to PKL: CHD3-type chromatin-remodeling factor PICKLE (Arabidopsis thaliana OX%3D3702) | chr12_Vaccinium_macrocarpon_Stevens_v1 | + | View |
| Vaccinium macrocarpon | vmacro11232 | Similar to PKL: CHD3-type chromatin-remodeling factor PICKLE (Arabidopsis thaliana OX%3D3702) | chr8_Vaccinium_macrocarpon_Stevens_v1 | - | View |
| Vigna mungo | VMungo0647G2573 | CM024073.1 | + | View | |
| Vitis vinifera | GSVIVG01035901001 | chr4 | + | View |