Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0003932 hypothetical protein POPTR_0014s17280g [Populus trichocarpa] Chr4 + View
CSS0044426 PREDICTED: pentatricopeptide repeat-containing protein At5g46460, mitochondrial [Vitis vinifera] Chr8 - View
CSS0048245 PREDICTED: pentatricopeptide repeat-containing protein At3g53360, mitochondrial-like [Nicotiana sylvestris] Chr7 - View
CSS0002346 PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Vitis vinifera] Chr3 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG2G19250 LG-2 + View
Aethionema arabicum Aa31LG2G19660 LG-2 + View
Acer truncatum Atru.chr9.244 chr9 + View
Acer truncatum Atru.chr7.306 chr7 - View
Actinidia chinensis Actinidia24374 Lachesis_group1 - View
Arabidopsis lyrata AL7G21420 scaffold_7 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.E98L7U PF01535//PF04484//PF12854//PF13041//PF14432 - PPR repeat (PPR) // Family of unknown function (DUF566) (DUF566) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) arahy.Tifrunner.gnm1.Arahy.11 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.V8KP6I PF01535//PF12854//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) arahy.Tifrunner.gnm1.Arahy.01 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.HQFS40 arahy.Tifrunner.gnm1.Arahy.11 + View
Arabidopsis thaliana AT4G30700 Pentatricopeptide repeat (PPR) superfamily protein Encodes a pentatricopeptide repeat protein involved in mitochondrial RNA editing. Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G33990.1)%3B Has 41014 Blast hits to 14356 proteins in 276 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 149%3B Fungi - 107%3B Plants - 40176%3B Viruses - 0%3B Other Eukaryotes - 574 (source: NCBI BLink). Chr4 - View
Arabidopsis thaliana AT2G29760 Tetratricopeptide repeat (TPR)-like superfamily protein Encodes a chloroplast RNA editing factor. ORGANELLE TRANSCRIPT PROCESSING 81 (OTP81)%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G08070.1)%3B Has 39055 Blast hits to 14294 proteins in 286 species: Archae - 1%3B Bacteria - 14%3B Metazoa - 160%3B Fungi - 158%3B Plants - 37962%3B Viruses - 2%3B Other Eukaryotes - 758 (source: NCBI BLink). Chr2 + View
Brassica napus A03p60260 A03 - View
Brassica napus C01p08170 C01 + View
Brassica napus C07p58170 C07 - View
Brassica oleracea BolC1t00804H C1 + View
Brassica rapa BraA03t15066Z A03 - View
Capsicum annuum CAN.G160.22 PGAv.1.6.scaffold160 + View
Coffea canephora Cc06_g14680 Pentatricopeptide repeat-containing protein At4g30700 chr6 + View
Citrus clementina Ciclev10007511m.g scaffold_1 - View
Carpinus fangiana Cfa020801 Cfa08 + View
Cardamine hirsuta CARHR238580 Pentatricopeptide repeat-containing protein Chr7 - View
Cardamine hirsuta CARHR123110 Pentatricopeptide repeat-containing protein, putative Chr4 + View
Carya illinoinensis CiPaw.15G165700 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr15 + View
Carica papaya Cpa.g.sc46.180 supercontig_46 - View
Chenopodium quinoa AUR62028353 DYW9: Pentatricopeptide repeat-containing protein At4g30700 C_Quinoa_Scaffold_1426 - View
Chenopodium quinoa AUR62025350 DYW9: Pentatricopeptide repeat-containing protein At4g30700 C_Quinoa_Scaffold_4329 - View
Capsella rubella Carub.0004s1086 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) scaffold_4 + View
Daucus carota DCAR_019411 hypothetical protein DCARv2_Chr5 - View
Davidia involucrata Dinv43267 GWHABJS00000085 - View
Davidia involucrata Dinv41357 GWHABJS00000013 + View
Durio zibethinus Duzib168G1833 NW_019168159.1 + View
Erigeron canadensis ECA234G0128 Conyza_canadensis_scaffold:4 - View
Eucalyptus grandis Eucgr.C00245 Chr03 + View
Erythranthe guttata Migut.K00307 scaffold_11 + View
Eutrema salsugineum Thhalv10024455m.g PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) scaffold_1 + View
Fragaria x ananassa FAN28G1638 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb1-1 - View
Fragaria x ananassa FAN26G2066 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb1-2 - View
Fragaria vesca FvH4_1g00680 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb1 + View
Glycine max Glyma.02G200300 K02962 - small subunit ribosomal protein S17e (RP-S17e, RPS17) Gm02 - View
Glycine max Glyma.02G205866 PF01535//PF14432 - PPR repeat (PPR) // DYW family of nucleic acid deaminases (DYW_deaminase) Gm02 - View
Glycine max Glyma.17G072100 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Gm17 + View
Lotus japonicus Lj4g0013989 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) chr4 + View
Lonicera japonica Lj7P462T29 GWHAAZE00000007 - View
Lactuca sativa Lsat_1_v5_gn_7_50200 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Lsat_1_v8_lg_7 + View
Malus domestica MD02G1005500 Pentatricopeptide repeat (PPR) superfamily protein Chr02 + View
Malus domestica MD15G1150000 Pentatricopeptide repeat (PPR) superfamily protein Chr15 + View
Manihot esculenta Manes.14G143100 Chromosome14 - View
Medicago truncatula Medtr4g130500 pentatricopeptide (PPR) repeat protein chr4 + View
Nelumbo nucifera Nn8g39987 chr8 - View
Petunia axillaris Peaxi162Scf00401g00032 Pentatricopeptide repeat-containing protein Peaxi162Scf00401 + View
Punica granatum PGR102G2228 NC_045129.1 + View
Punica granatum PGR119G1872 NC_045132.1 - View
Prunus persica Prupe.7G265500 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Pp07 - View
Populus trichocarpa Potri.006G181800 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr06 + View
Phaseolus vulgaris Phvul.003G154400 PF01535//PF12854//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr03 + View
Quercus lobata QL02p093846 CM012294 - View
Rhododendron simsii Rhsim03G0256300 chr03 + View
Rhododendron simsii Rhsim01G0027100 chr01 + View
Salix brachista Sabra06G0138600 GWHAAZH00000006 + View
Sequoiadendron giganteum SEGI_35395 chr5 - View
Sequoiadendron giganteum SEGI_02320 chr5 - View
Sapria himalayana SHI02870 scaffold5_19632047 - View
Solanum lycopersicum Solyc07g005740.1 Pentatricopeptide repeat (AHRD V3.3 *** A0A200QWP2_9MAGN) SL4.0ch07 + View
Schrenkiella parvula Sp4g12460 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) ch4-6 + View
Schrenkiella parvula Sp7g28610 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) ch7-5 - View
Selenicereus undatus Hund10292 Scaffold_10417 - View
Trochodendron aralioides TAR383G1103 group10 + View
Theobroma cacao Thecc.09G151800 Pentatricopeptide repeat (PPR) superfamily protein Chromosome_9 - View
Theobroma cacao Thecc.09G027200 Chromosome_9 - View
Tarenaya hassleriana THA.LOC104803574 pentatricopeptide repeat-containing protein At4g31070%2C mitochondrial NW_010971389.1 - View
Trifolium pratense TPR.G24879 Tp57577_TGAC_v2_scaf_171 + View
Tripterygium wilfordii TWI73G0656 NC_052232.1 + View
Vaccinium macrocarpon vmacro06090 Similar to PCMP-E84: Pentatricopeptide repeat-containing protein At3g49740 (Arabidopsis thaliana OX%3D3702) chr2_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1215G2050 CM024074.1 - View
Vitis vinifera GSVIVG01023644001 chr11 - View
Zea mays Zm00001eb374510 Zm00001e036301 pentatricopeptide repeat protein2263 9 + View