Gene: AT4G30700

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G30700
  • Transcript Identifier AT4G30700.1
  • Gene Type Coding gene
  • Location Chr4 : 14962617-14964995 : negative

Gene Family Information

  • ID HOM05D000001
  • #Genes/#Species 35287/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G30700.1
  • symbol MEF29
  • full_name MITOCHONDRIAL EDITING FACTOR29
  • uniprot Q9SUH6

Descriptions

  • Description Pentatricopeptide repeat (PPR) superfamily protein
  • Computational description Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G33990.1); Has 41014 Blast hits to 14356 proteins in 276 species: Archae - 0; Bacteria - 8; Metazoa - 149; Fungi - 107; Plants - 40176; Viruses - 0; Other Eukaryotes - 574 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000963
IMP
Gene Ontologymitochondrial RNA processing1
GO:0016554
IMP
Gene Ontologycytidine to uridine editing1
GO:0080156
IMP
Gene Ontologymitochondrial mRNA modification1
GO:0009451
IBA
Gene OntologyRNA modification2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003723
IBA
Gene OntologyRNA binding2
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
IDA, IMP
ISM
Gene Ontologymitochondrion1
GO:0009507
IDA
Gene Ontologychloroplast1
GO:0043231
IBA
Gene Ontologyintracellular membrane-bounded organelle2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR032867 DYW domain
IPR002885 Pentatricopeptide repeat
IPR011990 Tetratricopeptide-like helical domain superfamily
Mapman id Description
16.11.3.3.4.22 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (MEF29)