Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AUR62007105 MSH4: DNA mismatch repair protein MSH4 C_Quinoa_Scaffold_1971 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG6G120 LG-6 + View
Acer truncatum Atru.chr9.1288 chr9 - View
Actinidia chinensis Actinidia02146 Lachesis_group23 + View
Arabidopsis lyrata AL7G37330 scaffold_7 - View
Avicennia marina MSTRG.12114 ScioBoG_17730_HRSCAF_17811 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.7NLF36 K08740 - DNA mismatch repair protein MSH4 (MSH4) arahy.Tifrunner.gnm1.Arahy.15 + View
Arabidopsis thaliana AT4G17380 MUTS-like protein 4 Encodes the Arabidopsis homolog of MSH4%2C a meiosis-specific member of the MutS-homolog family of genes. It is expressed only in floral tissues and only during early meiotic prophase I%2C preceding the synapsis of homologous chromosomes. It is involved in the early steps of recombination. MUTS-like protein 4 (MSH4)%3B FUNCTIONS IN: damaged DNA binding%2C mismatched DNA binding%2C ATP binding%3B INVOLVED IN: mismatch repair%2C synapsis%2C meiotic prophase I%3B LOCATED IN: condensed nuclear chromosome%3B EXPRESSED IN: flower%2C sporocyte%3B EXPRESSED DURING: petal differentiation and expansion stage%2C IL.00 inflorescence just visible%3B CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS%2C clamp (InterPro:IPR007861)%2C DNA mismatch repair protein MutS%2C C-terminal (InterPro:IPR000432)%2C DNA mismatch repair protein MutS%2C core (InterPro:IPR007696)%3B BEST Arabidopsis thaliana protein match is: MUTS homolog 2 (TAIR:AT3G18524.1)%3B Has 13303 Blast hits to 13154 proteins in 2712 species: Archae - 169%3B Bacteria - 9120%3B Metazoa - 661%3B Fungi - 837%3B Plants - 451%3B Viruses - 3%3B Other Eukaryotes - 2062 (source: NCBI BLink). Chr4 + View
Amborella trichopoda ATR0057G027 AmTr_v1.0_scaffold00111 + View
Beta vulgaris EL10Ac5g12365 K08740 - DNA mismatch repair protein MSH4 (MSH4) Chr5_EL10_PGA_scaffold2 - View
Camellia sinensis var. sinensis CSS0014382 MUTS-like protein 4 [Theobroma cacao] Contig171 + View
Cannabis sativa CANSAT21G2208 NC_044374.1 - View
Cicer arietinum L. Ca_24591_v3 Ca_LG8_v3 + View
Coffea canephora Cc08_g12230 Putative MutS protein homolog 4 chr8 - View
Citrus clementina Ciclev10018920m.g scaffold_3 - View
Cardamine hirsuta CARHR223990 DNA mismatch repair protein mutS Chr7 + View
Carya illinoinensis CiPaw.11G081300 K08740 - DNA mismatch repair protein MSH4 (MSH4) Chr11 + View
Citrullus lanatus ClCG01G004190 DNA mismatch repair protein mutS CG_Chr01 + View
Cucumis melo MELO3C005519.2 DNA mismatch repair protein MSH4 chr09 - View
Carica papaya Cpa.g.sc29.180 supercontig_29 + View
Capsella rubella Carub.0007s2403 K08740 - DNA mismatch repair protein MSH4 (MSH4) scaffold_7 - View
Cucumis sativus L. CsaV3_5G004390 DNA mismatch repair protein MutS chr5 + View
Daucus carota DCAR_006840 hypothetical protein DCARv2_Chr2 + View
Davidia involucrata Dinv21648 GWHABJS00000017 + View
Durio zibethinus Duzib068G0290 NW_019167838.1 - View
Eucalyptus grandis Eucgr.E00409 Chr05 - View
Erythranthe guttata Migut.A01122 scaffold_1 + View
Eutrema salsugineum Thhalv10024454m.g K08740 - DNA mismatch repair protein MSH4 (MSH4) scaffold_1 - View
Fragaria x ananassa FAN08G0299 K08740 - DNA mismatch repair protein MSH4 (MSH4) Fvb5-3 - View
Fragaria x ananassa FAN13G1102 PTHR11361:SF21 - MUTS PROTEIN HOMOLOG 4 Fvb5-2 + View
Fragaria x ananassa FAN18G0162 K08740 - DNA mismatch repair protein MSH4 (MSH4) Fvb5-1 - View
Fragaria x ananassa FAN04G3230 K08740 - DNA mismatch repair protein MSH4 (MSH4) Fvb5-4 + View
Gossypium hirsutum Gohir.A12G215766 PTHR11361//PTHR11361:SF21 - DNA MISMATCH REPAIR MUTS RELATED PROTEINS // MUTS PROTEIN HOMOLOG 4 A12 - View
Gossypium hirsutum Gohir.D12G218466 PTHR11361//PTHR11361:SF21 - DNA MISMATCH REPAIR MUTS RELATED PROTEINS // MUTS PROTEIN HOMOLOG 4 D12 - View
Glycine max Glyma.11G034600 K08740 - DNA mismatch repair protein MSH4 (MSH4) Gm11 + View
Gossypium raimondii Gorai.008G234100 Chr08 - View
Lupinus albus Lalb_Chr16g0379491 Lalb_Chr16 - View
Lotus japonicus Lj2g0021636 K08740 - DNA mismatch repair protein MSH4 (MSH4) chr2 + View
Lonicera japonica Lj2C221G5 GWHAAZE00000002 + View
Lactuca sativa Lsat_1_v5_gn_3_1200 K08740 - DNA mismatch repair protein MSH4 (MSH4) Lsat_1_v8_lg_3 + View
Magnolia biondii MBI04_g09523_MAGBIO AED:0.21 Chr04 - View
Malus domestica MD04G1062200 MUTS-like protein 4 Chr04 - View
Manihot esculenta Manes.01G082400 Chromosome01 + View
Punica granatum PGR042G2104 NC_045130.1 - View
Prunus persica Prupe.5G066100 K08740 - DNA mismatch repair protein MSH4 (MSH4) Pp05 + View
Pisum sativum Psat2g176640 MutS domain V chr2LG1 - View
Populus trichocarpa Potri.003G078601 Chr03 + View
Populus trichocarpa Potri.001G156200 K08740 - DNA mismatch repair protein MSH4 (MSH4) Chr01 - View
Phaseolus vulgaris Phvul.002G057100 Chr02 - View
Quercus lobata QL12p011636 12 - View
Rosa chinensis RcHm_v2.0_Chr7g0203731 RcHm_v2.0_Chr7 + View
Striga asiatica SGA_v2.0_scaffold104G30171 scaffold104 - View
Salvia bowleyana SalBow6G3355 GWHASIU00000002 + View
Salix brachista Sabra01G0134700 GWHAAZH00000001 + View
Simmondsia chinensis Sc22g0000960 GWHAASQ00000022 + View
Sechium edule Sed0012504 LG05 - View
Selenicereus undatus Hund11605 Scaffold_10417 + View
Trochodendron aralioides TAR375G0818 group15 - View
Theobroma cacao Thecc.03G248800 MUTS-like protein 4 Chromosome_3 - View
Trifolium pratense TPR.G18117 Tp57577_TGAC_v2_LG2 - View
Tripterygium wilfordii TWI15G1253 NC_052247.1 - View
Vaccinium macrocarpon vmacro00189 Similar to MSH4: DNA mismatch repair protein MSH4 (Arabidopsis thaliana OX%3D3702) chr1_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1215G0570 CM024074.1 + View
Vitis vinifera GSVIVG01004726001 chrUn + View