Functional clusters

Information

  • Type Gene Ontology
  • Description cellular response to endogenous stimulus

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Lactuca sativa Lsat_1_v8_lg_1 3 CH_lsa_503 13 75 0.000887897
Nelumbo nucifera chr1 3 CH_nnu_274 11 52 0.000326441
Tripterygium wilfordii NC_052253.1 3 CH_twi_229 9 19 0.000155318
Lactuca sativa Lsat_1_v8_lg_1 4 CH_lsa_503 13 75 0.000887897
Nelumbo nucifera chr1 4 CH_nnu_274 11 52 0.000326441
Tripterygium wilfordii NC_052253.1 4 CH_twi_229 9 19 0.000155318

Available child term results

Ontology identifier Description Number of clusters
GO:0009734 auxin-activated signaling pathway 74
GO:0009736 cytokinin-activated signaling pathway 16
GO:0009738 abscisic acid-activated signaling pathway 10
GO:0009740 gibberellic acid mediated signaling pathway 6
GO:0009742 brassinosteroid mediated signaling pathway 2
GO:0009755 hormone-mediated signaling pathway 2
GO:0009787 regulation of abscisic acid-activated signaling pathway 12
GO:0009788 negative regulation of abscisic acid-activated signaling pathway 6
GO:0009789 positive regulation of abscisic acid-activated signaling pathway 2
GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway 8
GO:0009866 induced systemic resistance, ethylene mediated signaling pathway 8
GO:0009868 jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway 8
GO:0009873 ethylene-activated signaling pathway 216
GO:0009937 regulation of gibberellic acid mediated signaling pathway 8
GO:0009939 positive regulation of gibberellic acid mediated signaling pathway 2
GO:0010104 regulation of ethylene-activated signaling pathway 20
GO:0010105 negative regulation of ethylene-activated signaling pathway 12
GO:0010315 auxin efflux 16
GO:0032870 cellular response to hormone stimulus 2
GO:0060774 auxin mediated signaling pathway involved in phyllotactic patterning 2
GO:0071215 cellular response to abscisic acid stimulus 6
GO:0071230 cellular response to amino acid stimulus 6
GO:0071323 cellular response to chitin 12
GO:0071367 cellular response to brassinosteroid stimulus 4
GO:0071369 cellular response to ethylene stimulus 8
GO:0071370 cellular response to gibberellin stimulus 6
GO:0071395 cellular response to jasmonic acid stimulus 4
GO:0072423 response to DNA damage checkpoint signaling 20
GO:0080036 regulation of cytokinin-activated signaling pathway 10
GO:0080037 negative regulation of cytokinin-activated signaling pathway 24
GO:0080038 positive regulation of cytokinin-activated signaling pathway 2
GO:0106167 extracellular ATP signaling 2
GO:1900457 regulation of brassinosteroid mediated signaling pathway 6
GO:1900459 positive regulation of brassinosteroid mediated signaling pathway 38
GO:1901181 negative regulation of cellular response to caffeine 2
GO:1901527 abscisic acid-activated signaling pathway involved in stomatal movement 16
GO:2000022 regulation of jasmonic acid mediated signaling pathway 18

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001