Functional clusters

Information

  • Type Gene Ontology
  • Description ligase activity

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Lupinus albus Lalb_Chr13 3 CH_lal_309 4 4 0.000193063
Lupinus albus Lalb_Chr08 3 CH_lal_310 4 4 0.000193063
Prunus persica Pp05 3 CH_ppe_406 7 43 0.00034252
Lupinus albus Lalb_Chr13 4 CH_lal_309 4 4 0.000193063
Lupinus albus Lalb_Chr08 4 CH_lal_310 4 4 0.000193063
Prunus persica Pp05 4 CH_ppe_406 7 43 0.00034252

Available child term results

Ontology identifier Description Number of clusters
GO:0003883 CTP synthase activity 16
GO:0003910 DNA ligase (ATP) activity 26
GO:0003922 GMP synthase (glutamine-hydrolyzing) activity 2
GO:0003952 NAD+ synthase (glutamine-hydrolyzing) activity 20
GO:0003972 RNA ligase (ATP) activity 32
GO:0003989 acetyl-CoA carboxylase activity 4
GO:0004019 adenylosuccinate synthase activity 12
GO:0004055 argininosuccinate synthase activity 22
GO:0004071 aspartate-ammonia ligase activity 2
GO:0004075 biotin carboxylase activity 8
GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity 2
GO:0004088 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity 4
GO:0004141 dethiobiotin synthase activity 2
GO:0004326 tetrahydrofolylpolyglutamate synthase activity 22
GO:0004329 formate-tetrahydrofolate ligase activity 12
GO:0004356 glutamate-ammonia ligase activity 12
GO:0004357 glutamate-cysteine ligase activity 38
GO:0004363 glutathione synthase activity 34
GO:0004485 methylcrotonoyl-CoA carboxylase activity 8
GO:0004516 nicotinate phosphoribosyltransferase activity 4
GO:0004592 pantoate-beta-alanine ligase activity 10
GO:0004632 phosphopantothenate--cysteine ligase activity 8
GO:0004637 phosphoribosylamine-glycine ligase activity 18
GO:0004639 phosphoribosylaminoimidazolesuccinocarboxamide synthase activity 6
GO:0004641 phosphoribosylformylglycinamidine cyclo-ligase activity 22
GO:0004642 phosphoribosylformylglycinamidine synthase activity 4
GO:0004813 alanine-tRNA ligase activity 2
GO:0004814 arginine-tRNA ligase activity 2
GO:0004815 aspartate-tRNA ligase activity 4
GO:0004820 glycine-tRNA ligase activity 4
GO:0004821 histidine-tRNA ligase activity 2
GO:0004822 isoleucine-tRNA ligase activity 18
GO:0004823 leucine-tRNA ligase activity 4
GO:0004824 lysine-tRNA ligase activity 2
GO:0004826 phenylalanine-tRNA ligase activity 4
GO:0004828 serine-tRNA ligase activity 4
GO:0004829 threonine-tRNA ligase activity 2
GO:0004831 tyrosine-tRNA ligase activity 8
GO:0004832 valine-tRNA ligase activity 6
GO:0004839 ubiquitin activating enzyme activity 24
GO:0008641 ubiquitin-like modifier activating enzyme activity 12
GO:0008716 D-alanine-D-alanine ligase activity 8
GO:0008756 o-succinylbenzoate-CoA ligase activity 2
GO:0008841 dihydrofolate synthase activity 8
GO:0008922 long-chain fatty acid [acyl-carrier-protein] ligase activity 2
GO:0010279 indole-3-acetic acid amido synthetase activity 4
GO:0016207 4-coumarate-CoA ligase activity 10
GO:0016405 CoA-ligase activity 10
GO:0016851 magnesium chelatase activity 10
GO:0016878 acid-thiol ligase activity 4
GO:0016879 ligase activity, forming carbon-nitrogen bonds 4
GO:0016881 acid-amino acid ligase activity 6
GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor 4
GO:0016886 ligase activity, forming phosphoric ester bonds 2
GO:0017178 diphthine-ammonia ligase activity 4
GO:0018858 benzoate-CoA ligase activity 12
GO:0019781 NEDD8 activating enzyme activity 2
GO:0019948 SUMO activating enzyme activity 4
GO:0030272 5-formyltetrahydrofolate cyclo-ligase activity 6
GO:0031957 very long-chain fatty acid-CoA ligase activity 4
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism 2
GO:0047760 butyrate-CoA ligase activity 2
GO:0050203 oxalate-CoA ligase activity 2
GO:0052625 4-aminobenzoate amino acid synthetase activity 2
GO:0080123 jasmonate-amino synthetase activity 2
GO:0102053 (-)-jasmonoyl-isoleucine synthetase activity 4
GO:0106290 trans-cinnamate-CoA ligase activity 8

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001