Functional clusters

Information

  • Type Gene Ontology
  • Description methyltransferase activity

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_344 3 CH_aag_37 10 22 0.00000000917391
Aethionema arabicum LG-2 3 CH_aar_228 4 4 0.000392025
Aethionema arabicum LG-4 3 CH_aar_57 7 8 0.00000000460758
Acer truncatum chr3 3 CH_acertr_60 12 45 0.000000000233054
Avicennia marina ScioBoG_102839_HRSCAF_103093 3 CH_ama_73 4 4 0.000186008
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 3 CH_arhy_122 9 10 0.000000000000379926
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 3 CH_arhy_164 9 13 0.0000000000264852
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 3 CH_arhy_250 6 6 0.0000000467754
Brassica carinata ChrC03 3 CH_bca_128 7 8 0.00000000165631
Brassica carinata ChrB05 3 CH_bca_175 7 10 0.0000000244964
Brassica carinata ChrC08 3 CH_bca_564 5 7 0.0000667757
Brassica carinata ChrC06 3 CH_bca_565 5 7 0.0000667757
Brassica carinata ChrB03 3 CH_bca_662 5 8 0.000176873
Brassica napus C02 3 CH_bna_273 5 5 0.00000281841
Brassica napus C06 3 CH_bna_363 5 6 0.0000168029
Brassica napus C09 3 CH_bna_364 5 6 0.0000168029
Brassica napus C05 3 CH_bna_434 6 14 0.000061199
Brassica napus A07 3 CH_bna_559 4 4 0.000369431
Brassica napus A10 3 CH_bna_560 4 4 0.000369431
Brassica napus C07 3 CH_bna_561 4 4 0.000369431
Brassica oleracea C6 3 CH_bol_199 5 6 0.00000562912
Brassica oleracea C9 3 CH_bol_78 6 6 0.00000000644635
Brassica rapa A07 3 CH_bra_241 4 4 0.000275438
Camellia sinensis var. sinensis Chr13 3 CH_camsi_839 5 13 0.000853275
Cannabis sativa NC_044372.1 3 CH_cansat_80 8 14 0.00000000274284
Cannabis sativa NC_044377.1 3 CH_cansat_83 7 9 0.00000000397106
Capsicum annuum PGAv.1.6.scaffold282 3 CH_can_13 15 15 1.27907e-26
Capsicum annuum PGAv.1.6.scaffold616 3 CH_can_209 7 17 0.00000361999
Capsicum annuum PGAv.1.6.scaffold1681 3 CH_can_356 4 4 0.000224236
Capsicum annuum PGAv.1.6.scaffold758 3 CH_can_54 10 12 0.0000000000000114235
Corylus avellana 1 3 CH_cav_70 8 11 0.000000000468392
Corylus avellana 11 3 CH_cav_71 8 11 0.000000000468392
Coffea canephora chr1 3 CH_ccan_120 6 62 0.00000177456
Coffea canephora chr9 3 CH_ccan_401 5 77 0.000904061
Carya illinoinensis Chr05 3 CH_cil_203 6 7 0.000000164611
Citrullus lanatus CG_Chr01 3 CH_cla_114 4 4 0.000107865
Citrullus lanatus CG_Chr06 3 CH_cla_160 4 5 0.000535761
Cucumis melo chr08 3 CH_cme_48 7 7 0.000000000226413
Corchorus olitorius AWUE01019102.1 3 CH_col_25 9 22 0.00000000863214
Carica papaya supercontig_6 3 CH_cpa_194 5 10 0.000171568
Capsella rubella scaffold_2 3 CH_cru_255 4 4 0.000198616
Cucumis sativus L. chr6 3 CH_csa_94 6 7 0.0000000506973
Davidia involucrata GWHABJS00000019 3 CH_din_247 7 27 0.0000533851
Eucalyptus grandis Chr11 3 CH_egr_356 7 8 0.00000000289813
Eucalyptus grandis Chr07 3 CH_egr_464 6 7 0.000000253381
Eucalyptus grandis Chr11 3 CH_egr_567 5 5 0.00000363711
Erythranthe guttata scaffold_14 3 CH_egut_108 7 8 0.00000000140657
Eutrema salsugineum scaffold_17 3 CH_esa_133 5 6 0.0000215139
Eutrema salsugineum scaffold_9 3 CH_esa_222 4 4 0.000341731
Eutrema salsugineum scaffold_16 3 CH_esa_68 6 6 0.0000000381596
Glycine max Gm09 3 CH_gma_52 8 8 0.0000000000024784
Gossypium raimondii Chr11 3 CH_gra_123 7 12 0.000000106064
Helianthus annuus HanXRQChr11 3 CH_han_378 5 6 0.00000667281
Hydrangea macrophylla Hma1.2p1_0500F.1 3 CH_hma_22 7 7 0.0000000000227794
Lonicera japonica GWHAAZE00000007 3 CH_lonja_292 6 10 0.00000192678
Lonicera japonica GWHAAZE00000004 3 CH_lonja_579 4 5 0.000724718
Magnolia biondii Chr16 3 CH_mbi_584 4 5 0.000459962
Malus domestica Chr06 3 CH_mdo_141 7 9 0.00000000493906
Malus domestica Chr14 3 CH_mdo_211 6 7 0.000000117828
Malus domestica Chr09 3 CH_mdo_293 5 5 0.00000205993
Malus domestica Chr10 3 CH_mdo_561 5 9 0.000252486
Manihot esculenta Chromosome15 3 CH_mes_348 5 9 0.000245532
Nelumbo nucifera chr5 3 CH_nnu_3 27 41 5.16822e-44
Nelumbo nucifera chr5 3 CH_nnu_88 7 14 0.000000124741
Nicotiana tabacum Nitab4.5_0000198 3 CH_nta_58 5 7 0.00000698205
Olea europaea chr5 3 CH_oeu_72 5 5 0.000000326607
Oryza sativa ssp. japonica chr06 3 CH_osa_299 6 16 0.0000530526
Oryza sativa ssp. japonica chr11 3 CH_osa_399 5 10 0.000339079
Oryza sativa ssp. japonica chr06 3 CH_osa_92 8 13 0.000000000912198
Prunus persica Pp05 3 CH_ppe_86 8 8 0.00000000000150858
Papaver somniferum NC_039363.1 3 CH_pso_234 10 52 0.000000056063
Papaver somniferum NW_020651082.1 3 CH_pso_487 4 4 0.000109008
Papaver somniferum NC_039359.1 3 CH_pso_637 4 5 0.000542466
Phaseolus vulgaris Chr03 3 CH_pvu_199 5 6 0.0000176737
Quercus lobata 6 3 CH_qlo_932 4 4 0.000412472
Rosa chinensis RcHm_v2.0_Chr4 3 CH_rch_292 11 77 0.000000211688
Rosa chinensis RcHm_v2.0_Chr7 3 CH_rch_33 13 18 1.59967e-20
Salvia bowleyana GWHASIU00000002 3 CH_sbo_65 9 12 0.0000000000000259159
Salix brachista GWHAAZH00000014 3 CH_sbr_396 4 5 0.000947737
Simmondsia chinensis GWHAASQ00000025 3 CH_sci_135 6 12 0.0000456697
Simmondsia chinensis GWHAASQ00000014 3 CH_sci_233 4 4 0.00040703
Simmondsia chinensis GWHAASQ00000026 3 CH_sci_33 7 8 0.00000000468399
Simmondsia chinensis GWHAASQ00000023 3 CH_sci_34 7 8 0.00000000468399
Simmondsia chinensis GWHAASQ00000022 3 CH_sci_86 6 8 0.00000143901
Sechium edule LG03 3 CH_sed_120 5 5 0.00000254676
Sechium edule LG10 3 CH_sed_121 5 5 0.00000254676
Sequoiadendron giganteum chr3 3 CH_sgi_1038 5 8 0.0000802945
Sequoiadendron giganteum chr6 3 CH_sgi_268 11 23 0.000000000000476015
Sequoiadendron giganteum chr7 3 CH_sgi_480 8 15 0.00000000465285
Sequoiadendron giganteum chr6 3 CH_sgi_734 5 5 0.00000146323
Sequoiadendron giganteum chr5 3 CH_sgi_762 6 10 0.00000240982
Schrenkiella parvula ch5-5 3 CH_spa_48 6 7 0.000000166123
Schrenkiella parvula ch5-6 3 CH_spa_67 5 5 0.00000244118
Solanum tuberosum ST4.03ch03 3 CH_stu_611 4 5 0.000747323
Trochodendron aralioides group5 3 CH_tar_364 4 4 0.000184815
Trochodendron aralioides group0 3 CH_tar_365 4 4 0.000184815
Theobroma cacao Chromosome_10 3 CH_tca_13 12 13 1.44286e-19
Theobroma cacao Chromosome_4 3 CH_tca_193 5 5 0.00000201636
Theobroma cacao Chromosome_1 3 CH_tca_205 6 10 0.00000381488
Tarenaya hassleriana NW_010960187.1 3 CH_tha_19 8 10 0.000000000167305
Tarenaya hassleriana NW_010971389.1 3 CH_tha_85 7 20 0.0000255048
Tripterygium wilfordii NC_052234.1 3 CH_twi_158 6 11 0.00000565475
Vigna mungo CM024070.1 3 CH_vmu_321 4 5 0.000857402
Vitis vinifera chr4 3 CH_vvi_31 13 15 8.84964e-20
Vitis vinifera chr18 3 CH_vvi_344 5 8 0.000241942
Zea mays 5 3 CH_zma_248 7 19 0.00020158
Anthoceros agrestis Sc2ySwM_344 4 CH_aag_37 10 22 0.00000000917391
Aethionema arabicum LG-2 4 CH_aar_228 4 4 0.000392025
Aethionema arabicum LG-4 4 CH_aar_57 7 8 0.00000000460758
Acer truncatum chr3 4 CH_acertr_60 12 45 0.000000000233054
Avicennia marina ScioBoG_102839_HRSCAF_103093 4 CH_ama_73 4 4 0.000186008
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 4 CH_arhy_122 9 10 0.000000000000379926
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 4 CH_arhy_164 9 13 0.0000000000264852
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 4 CH_arhy_250 6 6 0.0000000467754
Brassica carinata ChrC03 4 CH_bca_128 7 8 0.00000000165631
Brassica carinata ChrB05 4 CH_bca_175 7 10 0.0000000244964
Brassica carinata ChrC08 4 CH_bca_564 5 7 0.0000667757
Brassica carinata ChrC06 4 CH_bca_565 5 7 0.0000667757
Brassica carinata ChrB03 4 CH_bca_662 5 8 0.000176873
Brassica napus C02 4 CH_bna_273 5 5 0.00000281841
Brassica napus C06 4 CH_bna_363 5 6 0.0000168029
Brassica napus C09 4 CH_bna_364 5 6 0.0000168029
Brassica napus C05 4 CH_bna_434 6 14 0.000061199
Brassica napus A07 4 CH_bna_559 4 4 0.000369431
Brassica napus A10 4 CH_bna_560 4 4 0.000369431
Brassica napus C07 4 CH_bna_561 4 4 0.000369431
Brassica oleracea C6 4 CH_bol_199 5 6 0.00000562912
Brassica oleracea C9 4 CH_bol_78 6 6 0.00000000644635
Brassica rapa A07 4 CH_bra_241 4 4 0.000275438
Camellia sinensis var. sinensis Chr13 4 CH_camsi_839 5 13 0.000853275
Cannabis sativa NC_044372.1 4 CH_cansat_80 8 14 0.00000000274284
Cannabis sativa NC_044377.1 4 CH_cansat_83 7 9 0.00000000397106
Capsicum annuum PGAv.1.6.scaffold282 4 CH_can_13 15 15 1.27907e-26
Capsicum annuum PGAv.1.6.scaffold616 4 CH_can_209 7 17 0.00000361999
Capsicum annuum PGAv.1.6.scaffold1681 4 CH_can_356 4 4 0.000224236
Capsicum annuum PGAv.1.6.scaffold758 4 CH_can_54 10 12 0.0000000000000114235
Corylus avellana 1 4 CH_cav_70 8 11 0.000000000468392
Corylus avellana 11 4 CH_cav_71 8 11 0.000000000468392
Coffea canephora chr1 4 CH_ccan_120 6 62 0.00000177456
Coffea canephora chr9 4 CH_ccan_401 5 77 0.000904061
Carya illinoinensis Chr05 4 CH_cil_203 6 7 0.000000164611
Citrullus lanatus CG_Chr01 4 CH_cla_114 4 4 0.000107865
Citrullus lanatus CG_Chr06 4 CH_cla_160 4 5 0.000535761
Cucumis melo chr08 4 CH_cme_48 7 7 0.000000000226413
Corchorus olitorius AWUE01019102.1 4 CH_col_25 9 22 0.00000000863214
Carica papaya supercontig_6 4 CH_cpa_194 5 10 0.000171568
Capsella rubella scaffold_2 4 CH_cru_255 4 4 0.000198616
Cucumis sativus L. chr6 4 CH_csa_94 6 7 0.0000000506973
Davidia involucrata GWHABJS00000019 4 CH_din_247 7 27 0.0000533851
Eucalyptus grandis Chr11 4 CH_egr_356 7 8 0.00000000289813
Eucalyptus grandis Chr07 4 CH_egr_464 6 7 0.000000253381
Eucalyptus grandis Chr11 4 CH_egr_567 5 5 0.00000363711
Erythranthe guttata scaffold_14 4 CH_egut_108 7 8 0.00000000140657
Eutrema salsugineum scaffold_17 4 CH_esa_133 5 6 0.0000215139
Eutrema salsugineum scaffold_9 4 CH_esa_222 4 4 0.000341731
Eutrema salsugineum scaffold_16 4 CH_esa_68 6 6 0.0000000381596
Glycine max Gm09 4 CH_gma_52 8 8 0.0000000000024784
Gossypium raimondii Chr11 4 CH_gra_123 7 12 0.000000106064
Helianthus annuus HanXRQChr11 4 CH_han_378 5 6 0.00000667281
Hydrangea macrophylla Hma1.2p1_0500F.1 4 CH_hma_22 7 7 0.0000000000227794
Lonicera japonica GWHAAZE00000007 4 CH_lonja_292 6 10 0.00000192678
Lonicera japonica GWHAAZE00000004 4 CH_lonja_579 4 5 0.000724718
Magnolia biondii Chr16 4 CH_mbi_584 4 5 0.000459962
Malus domestica Chr06 4 CH_mdo_141 7 9 0.00000000493906
Malus domestica Chr14 4 CH_mdo_211 6 7 0.000000117828
Malus domestica Chr09 4 CH_mdo_293 5 5 0.00000205993
Malus domestica Chr10 4 CH_mdo_561 5 9 0.000252486
Manihot esculenta Chromosome15 4 CH_mes_348 5 9 0.000245532
Nelumbo nucifera chr5 4 CH_nnu_3 27 41 5.16822e-44
Nelumbo nucifera chr5 4 CH_nnu_88 7 14 0.000000124741
Nicotiana tabacum Nitab4.5_0000198 4 CH_nta_58 5 7 0.00000698205
Olea europaea chr5 4 CH_oeu_72 5 5 0.000000326607
Oryza sativa ssp. japonica chr06 4 CH_osa_299 6 16 0.0000530526
Oryza sativa ssp. japonica chr11 4 CH_osa_399 5 10 0.000339079
Oryza sativa ssp. japonica chr06 4 CH_osa_92 8 13 0.000000000912198
Prunus persica Pp05 4 CH_ppe_86 8 8 0.00000000000150858
Papaver somniferum NC_039363.1 4 CH_pso_234 10 52 0.000000056063
Papaver somniferum NW_020651082.1 4 CH_pso_487 4 4 0.000109008
Papaver somniferum NC_039359.1 4 CH_pso_637 4 5 0.000542466
Phaseolus vulgaris Chr03 4 CH_pvu_199 5 6 0.0000176737
Quercus lobata 6 4 CH_qlo_932 4 4 0.000412472
Rosa chinensis RcHm_v2.0_Chr4 4 CH_rch_292 11 77 0.000000211688
Rosa chinensis RcHm_v2.0_Chr7 4 CH_rch_33 13 18 1.59967e-20
Salvia bowleyana GWHASIU00000002 4 CH_sbo_65 9 12 0.0000000000000259159
Salix brachista GWHAAZH00000014 4 CH_sbr_396 4 5 0.000947737
Simmondsia chinensis GWHAASQ00000025 4 CH_sci_135 6 12 0.0000456697
Simmondsia chinensis GWHAASQ00000014 4 CH_sci_233 4 4 0.00040703
Simmondsia chinensis GWHAASQ00000026 4 CH_sci_33 7 8 0.00000000468399
Simmondsia chinensis GWHAASQ00000023 4 CH_sci_34 7 8 0.00000000468399
Simmondsia chinensis GWHAASQ00000022 4 CH_sci_86 6 8 0.00000143901
Sechium edule LG03 4 CH_sed_120 5 5 0.00000254676
Sechium edule LG10 4 CH_sed_121 5 5 0.00000254676
Sequoiadendron giganteum chr3 4 CH_sgi_1038 5 8 0.0000802945
Sequoiadendron giganteum chr6 4 CH_sgi_268 11 23 0.000000000000476015
Sequoiadendron giganteum chr7 4 CH_sgi_480 8 15 0.00000000465285
Sequoiadendron giganteum chr6 4 CH_sgi_734 5 5 0.00000146323
Sequoiadendron giganteum chr5 4 CH_sgi_762 6 10 0.00000240982
Schrenkiella parvula ch5-5 4 CH_spa_48 6 7 0.000000166123
Schrenkiella parvula ch5-6 4 CH_spa_67 5 5 0.00000244118
Solanum tuberosum ST4.03ch03 4 CH_stu_611 4 5 0.000747323
Trochodendron aralioides group5 4 CH_tar_364 4 4 0.000184815
Trochodendron aralioides group0 4 CH_tar_365 4 4 0.000184815
Theobroma cacao Chromosome_10 4 CH_tca_13 12 13 1.44286e-19
Theobroma cacao Chromosome_4 4 CH_tca_193 5 5 0.00000201636
Theobroma cacao Chromosome_1 4 CH_tca_205 6 10 0.00000381488
Tarenaya hassleriana NW_010960187.1 4 CH_tha_19 8 10 0.000000000167305
Tarenaya hassleriana NW_010971389.1 4 CH_tha_85 7 20 0.0000255048
Tripterygium wilfordii NC_052234.1 4 CH_twi_158 6 11 0.00000565475
Vigna mungo CM024070.1 4 CH_vmu_321 4 5 0.000857402
Vitis vinifera chr4 4 CH_vvi_31 13 15 8.84964e-20
Vitis vinifera chr18 4 CH_vvi_344 5 8 0.000241942
Zea mays 5 4 CH_zma_248 7 19 0.00020158

Available child term results

Ontology identifier Description Number of clusters
GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity 6
GO:0000234 phosphoethanolamine N-methyltransferase activity 18
GO:0000773 phosphatidyl-N-methylethanolamine N-methyltransferase activity 6
GO:0003838 sterol 24-C-methyltransferase activity 16
GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity 36
GO:0003886 DNA (cytosine-5-)-methyltransferase activity 2
GO:0004164 diphthine synthase activity 10
GO:0004395 hexaprenyldihydroxybenzoate methyltransferase activity 2
GO:0004482 mRNA (guanine-N7-)-methyltransferase activity 10
GO:0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity 4
GO:0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity 14
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity 24
GO:0004851 uroporphyrin-III C-methyltransferase activity 2
GO:0008171 O-methyltransferase activity 440
GO:0008173 RNA methyltransferase activity 2
GO:0008176 tRNA (guanine-N7-)-methyltransferase activity 20
GO:0008425 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity 8
GO:0008705 methionine synthase activity 2
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 22
GO:0010341 gibberellin carboxyl-O-methyltransferase activity 10
GO:0016206 catechol O-methyltransferase activity 32
GO:0016274 protein-arginine N-methyltransferase activity 20
GO:0016278 lysine N-methyltransferase activity 2
GO:0016423 tRNA (guanine) methyltransferase activity 2
GO:0016428 tRNA (cytosine-5-)-methyltransferase activity 4
GO:0016429 tRNA (adenine-N1-)-methyltransferase activity 12
GO:0016435 rRNA (guanine) methyltransferase activity 8
GO:0017096 acetylserotonin O-methyltransferase activity 28
GO:0018024 histone-lysine N-methyltransferase activity 24
GO:0018025 calmodulin-lysine N-methyltransferase activity 10
GO:0018708 thiol S-methyltransferase activity 28
GO:0019010 farnesoic acid O-methyltransferase activity 44
GO:0030750 putrescine N-methyltransferase activity 14
GO:0030775 glucuronoxylan 4-O-methyltransferase activity 6
GO:0030785 [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity 8
GO:0030795 methyl jasmonate methylesterase activity 24
GO:0033799 myricetin 3'-O-methyltransferase activity 8
GO:0035243 protein-arginine omega-N symmetric methyltransferase activity 2
GO:0042054 histone methyltransferase activity 2
GO:0042409 caffeoyl-CoA O-methyltransferase activity 34
GO:0042800 histone methyltransferase activity (H3-K4 specific) 6
GO:0046975 histone methyltransferase activity (H3-K36 specific) 8
GO:0046976 histone methyltransferase activity (H3-K27 specific) 6
GO:0047150 betaine-homocysteine S-methyltransferase activity 2
GO:0047763 caffeate O-methyltransferase activity 18
GO:0050342 tocopherol O-methyltransferase activity 26
GO:0051741 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity 10
GO:0051749 indole acetic acid carboxyl methyltransferase activity 2
GO:0052624 2-phytyl-1,4-naphthoquinone methyltransferase activity 2
GO:0052667 phosphomethylethanolamine N-methyltransferase activity 2
GO:0052907 23S rRNA (adenine(1618)-N(6))-methyltransferase activity 2
GO:0070037 rRNA (pseudouridine) methyltransferase activity 30
GO:0070042 rRNA (uridine-N3-)-methyltransferase activity 6
GO:0071164 RNA trimethylguanosine synthase activity 6
GO:0080012 trihydroxyferuloyl spermidine O-methyltransferase activity 86
GO:0080150 S-adenosyl-L-methionine:benzoic acid carboxyl methyl transferase activity 46
GO:0106050 tRNA 2'-O-methyltransferase activity 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001