Functional clusters

Information

  • Type MapMan
  • Description RNA processing.mRNA silencing.miRNA pathway

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Lupinus albus Lalb_Chr04 1 CH_lal_224 3 4 0.0000819243
Lupinus albus Lalb_Chr04 2 CH_lal_224 3 4 0.0000819243

Available child term results

Ontology identifier Description Number of clusters
16.9.2.1.1 RNA processing.mRNA silencing.miRNA pathway.DCL1-HYL1 miRNA biogenesis complex.endoribonuclease component DCL1 4
16.9.2.1.3 RNA processing.mRNA silencing.miRNA pathway.DCL1-HYL1 miRNA biogenesis complex.component SERRATE 14
16.9.2.1.4 RNA processing.mRNA silencing.miRNA pathway.DCL1-HYL1 miRNA biogenesis complex.component TOUGH 10
16.9.2.3 RNA processing.mRNA silencing.miRNA pathway.pri-miRNA recruitment factor (STV1) 12
16.9.2.4 RNA processing.mRNA silencing.miRNA pathway.HYL1-interacting scaffold factor (CARP9) 9
16.9.2.6 RNA processing.mRNA silencing.miRNA pathway.miRNA nuclease (SDN1) 8
16.9.2.7 RNA processing.mRNA silencing.miRNA pathway.miRNA recruiting factor (AGO1/AGO10) 14
16.9.2.8 RNA processing.mRNA silencing.miRNA pathway.AGO1-regulatory protein (SQN) 6
16.9.2.9.1 RNA processing.mRNA silencing.miRNA pathway.miRNA uridylation and cytidylation.uridylyltransferase (HESO1) 14
16.9.2.9.2 RNA processing.mRNA silencing.miRNA pathway.miRNA uridylation and cytidylation.uridylyltransferase (URT1) 5

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001