Functional clusters

Information

  • Type MapMan
  • Description Chromatin organisation.chromatin structure.DNA wrapping

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-5 1 CH_aar_83 5 15 0.000000671789
Acer truncatum chr3 1 CH_acertr_160 6 54 0.000000579458
Actinidia chinensis Lachesis_group15 1 CH_ach_254 3 5 0.000764132
Actinidia chinensis Lachesis_group9 1 CH_ach_62 4 7 0.00000326551
Arabidopsis lyrata scaffold_8 1 CH_aly_257 4 11 0.0000763783
Amaranthus hybridus AmaHy_arrow1_Scaffold_15 1 CH_amhyb_20 6 14 0.00000000065794
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 1 CH_arhy_250 4 6 0.00000027779
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 1 CH_arhy_407 3 3 0.0000263517
Beta vulgaris Chr7_EL10_PGA_scaffold5 1 CH_bvu_46 6 12 0.000000000221777
Camellia sinensis var. sinensis Chr4 1 CH_camsi_754 3 5 0.000335768
Coffea canephora chr1 1 CH_ccan_383 3 38 0.000930386
Citrus clementina scaffold_8 1 CH_ccl_270 4 15 0.0000613477
Cardamine hirsuta Chr8 1 CH_chi_205 5 36 0.0000530698
Carya illinoinensis Chr14 1 CH_cil_327 4 10 0.0000348719
Carya illinoinensis Chr13 1 CH_cil_331 4 12 0.000052253
Citrullus lanatus CG_Chr02 1 CH_cla_61 4 6 0.000000396839
Cucumis melo chr11 1 CH_cme_33 6 9 0.00000000000276006
Carica papaya supercontig_190 1 CH_cpa_44 5 15 0.000000048109
Chenopodium quinoa C_Quinoa_Scaffold_2716 1 CH_cqu_168 5 11 0.000000194794
Chenopodium quinoa C_Quinoa_Scaffold_2493 1 CH_cqu_184 5 12 0.000000333503
Chlamydomonas reinhardtii chromosome_6 1 CH_cre_2 26 80 4.34033e-33
Chlamydomonas reinhardtii chromosome_13 1 CH_cre_23 4 4 0.0000387722
Chlamydomonas reinhardtii chromosome_12 1 CH_cre_3 18 40 6.57531e-25
Chlamydomonas reinhardtii chromosome_17 1 CH_cre_4 16 66 1.1692e-16
Chlamydomonas reinhardtii chromosome_17 1 CH_cre_5 16 74 8.77908e-16
Daucus carota DCARv2_Chr2 1 CH_dca_11 9 17 6.63801e-18
Daucus carota DCARv2_Chr5 1 CH_dca_340 3 4 0.000322909
Durio zibethinus NW_019167882.1 1 CH_dzi_137 4 6 0.00000218038
Durio zibethinus NW_019167871.1 1 CH_dzi_249 5 44 0.000196804
Durio zibethinus NW_019168159.1 1 CH_dzi_321 3 4 0.000440635
Erigeron canadensis Conyza_canadensis_scaffold:3 1 CH_eca_230 5 29 0.0000147647
Erigeron canadensis Conyza_canadensis_scaffold:1 1 CH_eca_374 4 15 0.000144601
Eutrema salsugineum scaffold_2 1 CH_esa_128 4 8 0.00000759448
Fragaria x ananassa Fvb3-2 1 CH_fan_28 8 23 0.000000000000082782
Fragaria x ananassa Fvb3-4 1 CH_fan_35 8 28 0.000000000000522363
Fragaria x ananassa Fvb3-3 1 CH_fan_4 11 25 7.72577e-22
Fragaria x ananassa Fvb3-1 1 CH_fan_98 7 47 0.0000000101079
Fragaria vesca Fvb3 1 CH_fve_15 11 39 1.37586e-19
Gossypium hirsutum A08 1 CH_ghi_125 8 33 0.0000000000849461
Gossypium hirsutum D08 1 CH_ghi_186 7 30 0.00000000736959
Gossypium hirsutum A01 1 CH_ghi_360 5 14 0.00000251539
Gossypium raimondii Chr02 1 CH_gra_325 3 3 0.000188316
Gossypium raimondii Chr13 1 CH_gra_385 4 15 0.000420994
Gossypium raimondii Chr04 1 CH_gra_67 8 33 0.0000000000271549
Helianthus annuus HanXRQChr08 1 CH_han_82 10 48 0.00000000000154734
Hydrangea macrophylla Hma1.2p1_0035F.1 1 CH_hma_79 4 8 0.00000428667
Lupinus albus Lalb_Chr03 1 CH_lal_331 4 17 0.000401744
Lonicera japonica GWHAAZE00000002 1 CH_lonja_228 4 6 0.000000447611
Lactuca sativa Lsat_1_v8_lg_8 1 CH_lsa_132 8 39 0.00000000478049
Magnolia biondii Chr05 1 CH_mbi_267 5 20 0.00000951594
Micromonas commoda Chr_05 1 CH_mco_2 6 6 0.0000000000000548321
Malus domestica Chr03 1 CH_mdo_706 4 19 0.000679252
Manihot esculenta Chromosome04 1 CH_mes_316 5 37 0.0000927633
Medicago truncatula chr2 1 CH_mtr_213 6 15 0.00000000491626
Medicago truncatula chr4 1 CH_mtr_69 8 12 0.00000000000000120932
Nicotiana tabacum Nitab4.5_0000610 1 CH_nta_39 5 16 0.000000249719
Oryza sativa ssp. japonica chr05 1 CH_osa_290 5 48 0.000182553
Petunia axillaris Peaxi162Scf00406 1 CH_pax_177 4 12 0.0000695627
Physcomitrium patens Chr06 1 CH_ppa_42 4 5 0.000000861357
Prunus persica Pp06 1 CH_ppe_235 5 23 0.00000249347
Papaver somniferum NC_039365.1 1 CH_pso_102 11 77 0.00000000000486729
Papaver somniferum NC_039367.1 1 CH_pso_128 9 44 0.000000000109136
Papaver somniferum NC_039361.1 1 CH_pso_151 8 36 0.00000000208851
Quercus lobata 1 1 CH_qlo_715 4 14 0.0000730477
Rosa chinensis RcHm_v2.0_Chr5 1 CH_rch_53 11 55 1.89905e-17
Rhododendron simsii chr01 1 CH_rsi_238 5 17 0.00000151268
Rhododendron simsii chr13 1 CH_rsi_97 6 10 0.0000000000735997
Striga asiatica scaffold75 1 CH_sas_57 4 11 0.000055308
Simmondsia chinensis GWHAASQ00000006 1 CH_sci_186 4 14 0.000135201
Sechium edule LG01 1 CH_sed_120 4 6 0.00000201208
Sechium edule LG05 1 CH_sed_30 6 7 0.00000000000177309
Sequoiadendron giganteum chr4 1 CH_sgi_494 5 8 0.0000000406546
Selenicereus undatus Scaffold_33675 1 CH_sun_97 3 5 0.0000360114
Trochodendron aralioides group7 1 CH_tar_120 6 19 0.000000072761
Theobroma cacao Chromosome_9 1 CH_tca_266 4 14 0.0000478529
Theobroma cacao Chromosome_5 1 CH_tca_368 4 21 0.000284343
Tarenaya hassleriana NW_010968505.1 1 CH_tha_126 4 13 0.000180472
Tarenaya hassleriana NW_010967707.1 1 CH_tha_96 4 9 0.0000319756
Tripterygium wilfordii NC_052238.1 1 CH_twi_162 4 10 0.0000271074
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_93 5 12 0.0000000355401
Aethionema arabicum LG-5 2 CH_aar_83 5 15 0.000000671789
Acer truncatum chr3 2 CH_acertr_160 6 54 0.000000579458
Actinidia chinensis Lachesis_group15 2 CH_ach_254 3 5 0.000764132
Actinidia chinensis Lachesis_group9 2 CH_ach_62 4 7 0.00000326551
Arabidopsis lyrata scaffold_8 2 CH_aly_257 4 11 0.0000763783
Amaranthus hybridus AmaHy_arrow1_Scaffold_15 2 CH_amhyb_20 6 14 0.00000000065794
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 2 CH_arhy_250 4 6 0.00000027779
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 2 CH_arhy_407 3 3 0.0000263517
Beta vulgaris Chr7_EL10_PGA_scaffold5 2 CH_bvu_46 6 12 0.000000000221777
Camellia sinensis var. sinensis Chr4 2 CH_camsi_754 3 5 0.000335768
Coffea canephora chr1 2 CH_ccan_383 3 38 0.000930386
Citrus clementina scaffold_8 2 CH_ccl_270 4 15 0.0000613477
Cardamine hirsuta Chr8 2 CH_chi_205 5 36 0.0000530698
Carya illinoinensis Chr14 2 CH_cil_327 4 10 0.0000348719
Carya illinoinensis Chr13 2 CH_cil_331 4 12 0.000052253
Citrullus lanatus CG_Chr02 2 CH_cla_61 4 6 0.000000396839
Cucumis melo chr11 2 CH_cme_33 6 9 0.00000000000276006
Carica papaya supercontig_190 2 CH_cpa_44 5 15 0.000000048109
Chenopodium quinoa C_Quinoa_Scaffold_2716 2 CH_cqu_168 5 11 0.000000194794
Chenopodium quinoa C_Quinoa_Scaffold_2493 2 CH_cqu_184 5 12 0.000000333503
Chlamydomonas reinhardtii chromosome_6 2 CH_cre_2 26 80 4.34033e-33
Chlamydomonas reinhardtii chromosome_13 2 CH_cre_23 4 4 0.0000387722
Chlamydomonas reinhardtii chromosome_12 2 CH_cre_3 18 40 6.57531e-25
Chlamydomonas reinhardtii chromosome_17 2 CH_cre_4 16 66 1.1692e-16
Chlamydomonas reinhardtii chromosome_17 2 CH_cre_5 16 74 8.77908e-16
Daucus carota DCARv2_Chr2 2 CH_dca_11 9 17 6.63801e-18
Daucus carota DCARv2_Chr5 2 CH_dca_340 3 4 0.000322909
Durio zibethinus NW_019167882.1 2 CH_dzi_137 4 6 0.00000218038
Durio zibethinus NW_019167871.1 2 CH_dzi_249 5 44 0.000196804
Durio zibethinus NW_019168159.1 2 CH_dzi_321 3 4 0.000440635
Erigeron canadensis Conyza_canadensis_scaffold:3 2 CH_eca_230 5 29 0.0000147647
Erigeron canadensis Conyza_canadensis_scaffold:1 2 CH_eca_374 4 15 0.000144601
Eutrema salsugineum scaffold_2 2 CH_esa_128 4 8 0.00000759448
Fragaria x ananassa Fvb3-2 2 CH_fan_28 8 23 0.000000000000082782
Fragaria x ananassa Fvb3-4 2 CH_fan_35 8 28 0.000000000000522363
Fragaria x ananassa Fvb3-3 2 CH_fan_4 11 25 7.72577e-22
Fragaria x ananassa Fvb3-1 2 CH_fan_98 7 47 0.0000000101079
Fragaria vesca Fvb3 2 CH_fve_15 11 39 1.37586e-19
Gossypium hirsutum A08 2 CH_ghi_125 8 33 0.0000000000849461
Gossypium hirsutum D08 2 CH_ghi_186 7 30 0.00000000736959
Gossypium hirsutum A01 2 CH_ghi_360 5 14 0.00000251539
Gossypium raimondii Chr02 2 CH_gra_325 3 3 0.000188316
Gossypium raimondii Chr13 2 CH_gra_385 4 15 0.000420994
Gossypium raimondii Chr04 2 CH_gra_67 8 33 0.0000000000271549
Helianthus annuus HanXRQChr08 2 CH_han_82 10 48 0.00000000000154734
Hydrangea macrophylla Hma1.2p1_0035F.1 2 CH_hma_79 4 8 0.00000428667
Lupinus albus Lalb_Chr03 2 CH_lal_331 4 17 0.000401744
Lonicera japonica GWHAAZE00000002 2 CH_lonja_228 4 6 0.000000447611
Lactuca sativa Lsat_1_v8_lg_8 2 CH_lsa_132 8 39 0.00000000478049
Magnolia biondii Chr05 2 CH_mbi_267 5 20 0.00000951594
Micromonas commoda Chr_05 2 CH_mco_2 6 6 0.0000000000000548321
Malus domestica Chr03 2 CH_mdo_706 4 19 0.000679252
Manihot esculenta Chromosome04 2 CH_mes_316 5 37 0.0000927633
Nicotiana tabacum Nitab4.5_0000610 2 CH_nta_39 5 16 0.000000249719
Oryza sativa ssp. japonica chr05 2 CH_osa_290 5 48 0.000182553
Petunia axillaris Peaxi162Scf00406 2 CH_pax_177 4 12 0.0000695627
Physcomitrium patens Chr06 2 CH_ppa_42 4 5 0.000000861357
Prunus persica Pp06 2 CH_ppe_235 5 23 0.00000249347
Papaver somniferum NC_039365.1 2 CH_pso_102 11 77 0.00000000000486729
Papaver somniferum NC_039367.1 2 CH_pso_128 9 44 0.000000000109136
Papaver somniferum NC_039361.1 2 CH_pso_151 8 36 0.00000000208851
Quercus lobata 1 2 CH_qlo_715 4 14 0.0000730477
Rosa chinensis RcHm_v2.0_Chr5 2 CH_rch_53 11 55 1.89905e-17
Rhododendron simsii chr01 2 CH_rsi_238 5 17 0.00000151268
Rhododendron simsii chr13 2 CH_rsi_97 6 10 0.0000000000735997
Striga asiatica scaffold75 2 CH_sas_57 4 11 0.000055308
Simmondsia chinensis GWHAASQ00000006 2 CH_sci_186 4 14 0.000135201
Sechium edule LG01 2 CH_sed_120 4 6 0.00000201208
Sechium edule LG05 2 CH_sed_30 6 7 0.00000000000177309
Sequoiadendron giganteum chr4 2 CH_sgi_494 5 8 0.0000000406546
Selenicereus undatus Scaffold_33675 2 CH_sun_97 3 5 0.0000360114
Trochodendron aralioides group7 2 CH_tar_120 6 19 0.000000072761
Theobroma cacao Chromosome_9 2 CH_tca_266 4 14 0.0000478529
Theobroma cacao Chromosome_5 2 CH_tca_368 4 21 0.000284343
Tarenaya hassleriana NW_010968505.1 2 CH_tha_126 4 13 0.000180472
Tarenaya hassleriana NW_010967707.1 2 CH_tha_96 4 9 0.0000319756
Tripterygium wilfordii NC_052238.1 2 CH_twi_162 4 10 0.0000271074
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_93 5 12 0.0000000355401

Available child term results

Ontology identifier Description Number of clusters
12.1.1.1 Chromatin organisation.chromatin structure.DNA wrapping.histone (H2A) 61
12.1.1.2 Chromatin organisation.chromatin structure.DNA wrapping.histone (H2B) 92
12.1.1.3 Chromatin organisation.chromatin structure.DNA wrapping.histone (H3) 73
12.1.1.4 Chromatin organisation.chromatin structure.DNA wrapping.histone (H4) 63

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001