Functional clusters
Information
- Type MapMan
- Description Chromatin organisation.chromatin structure.DNA wrapping.histone (H4)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aquilegia oxysepala | CHR07 | 1 | CH_aox_263 | 3 | 15 | 0.000367779 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.11 | 1 | CH_arhy_514 | 2 | 2 | 0.00017963 |
| Amborella trichopoda | AmTr_v1.0_scaffold00019 | 1 | CH_atr_135 | 3 | 5 | 0.00000794849 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 1 | CH_bvu_123 | 3 | 5 | 0.00000359755 |
| Cannabis sativa | NC_044374.1 | 1 | CH_cansat_175 | 3 | 4 | 0.000014483 |
| Cannabis sativa | NC_044377.1 | 1 | CH_cansat_7 | 11 | 49 | 7.35304e-24 |
| Capsicum annuum | PGAv.1.6.scaffold394 | 1 | CH_can_183 | 4 | 17 | 0.00000198489 |
| Capsicum annuum | PGAv.1.6.scaffold111 | 1 | CH_can_27 | 6 | 6 | 8.00221e-17 |
| Corylus avellana | 10 | 1 | CH_cav_297 | 3 | 17 | 0.000119711 |
| Citrullus lanatus | CG_Chr11 | 1 | CH_cla_225 | 2 | 2 | 0.000887115 |
| Carica papaya | supercontig_1 | 1 | CH_cpa_391 | 2 | 2 | 0.000950661 |
| Cucumis sativus L. | chr6 | 1 | CH_csa_41 | 5 | 10 | 0.00000000000192661 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 1 | CH_eca_78 | 5 | 23 | 0.00000000204162 |
| Fragaria x ananassa | Fvb7-4 | 1 | CH_fan_355 | 4 | 38 | 0.000056974 |
| Glycine max | Gm11 | 1 | CH_gma_97 | 4 | 4 | 0.000000000635859 |
| Helianthus annuus | HanXRQChr12 | 1 | CH_han_143 | 5 | 8 | 0.000000000133309 |
| Helianthus annuus | HanXRQChr05 | 1 | CH_han_550 | 3 | 6 | 0.00018166 |
| Hydrangea macrophylla | Hma1.2p1_0597F.1 | 1 | CH_hma_354 | 2 | 2 | 0.000333259 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 1 | CH_lsa_181 | 4 | 6 | 0.000000107151 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 1 | CH_lsa_74 | 5 | 5 | 0.00000000000422706 |
| Magnolia biondii | Chr18 | 1 | CH_mbi_489 | 3 | 11 | 0.000265106 |
| Marchantia polymorpha | scaffold_10 | 1 | CH_mpo_39 | 3 | 3 | 0.000000365945 |
| Medicago truncatula | chr3 | 1 | CH_mtr_384 | 5 | 80 | 0.0000022096 |
| Petunia axillaris | Peaxi162Scf00015 | 1 | CH_pax_367 | 3 | 29 | 0.000946131 |
| Populus trichocarpa | Chr18 | 1 | CH_ptr_257 | 3 | 4 | 0.00000573166 |
| Phaseolus vulgaris | Chr11 | 1 | CH_pvu_172 | 4 | 13 | 0.00000060671 |
| Salix brachista | GWHAAZH00000005 | 1 | CH_sbr_167 | 3 | 6 | 0.00000416785 |
| Solanum lycopersicum | SL4.0ch06 | 1 | CH_sly_186 | 4 | 14 | 0.000000606265 |
| Solanum pennellii | Spenn-ch06 | 1 | CH_spe_155 | 4 | 13 | 0.000000134746 |
| Solanum tuberosum | ST4.03ch06 | 1 | CH_stu_226 | 4 | 16 | 0.000000733532 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 1 | CH_tpr_138 | 3 | 3 | 0.00000141825 |
| Vitis vinifera | chr13 | 1 | CH_vvi_168 | 3 | 3 | 0.000000303754 |
| Aquilegia oxysepala | CHR07 | 2 | CH_aox_263 | 3 | 15 | 0.000367779 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.11 | 2 | CH_arhy_514 | 2 | 2 | 0.00017963 |
| Amborella trichopoda | AmTr_v1.0_scaffold00019 | 2 | CH_atr_135 | 3 | 5 | 0.00000794849 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 2 | CH_bvu_123 | 3 | 5 | 0.00000359755 |
| Cannabis sativa | NC_044374.1 | 2 | CH_cansat_175 | 3 | 4 | 0.000014483 |
| Cannabis sativa | NC_044377.1 | 2 | CH_cansat_7 | 11 | 49 | 7.35304e-24 |
| Capsicum annuum | PGAv.1.6.scaffold394 | 2 | CH_can_183 | 4 | 17 | 0.00000198489 |
| Capsicum annuum | PGAv.1.6.scaffold111 | 2 | CH_can_27 | 6 | 6 | 8.00221e-17 |
| Corylus avellana | 10 | 2 | CH_cav_297 | 3 | 17 | 0.000119711 |
| Citrullus lanatus | CG_Chr11 | 2 | CH_cla_225 | 2 | 2 | 0.000887115 |
| Carica papaya | supercontig_1 | 2 | CH_cpa_391 | 2 | 2 | 0.000950661 |
| Cucumis sativus L. | chr6 | 2 | CH_csa_41 | 5 | 10 | 0.00000000000192661 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 2 | CH_eca_78 | 5 | 23 | 0.00000000204162 |
| Fragaria x ananassa | Fvb7-4 | 2 | CH_fan_355 | 4 | 38 | 0.000056974 |
| Glycine max | Gm11 | 2 | CH_gma_97 | 4 | 4 | 0.000000000635859 |
| Helianthus annuus | HanXRQChr12 | 2 | CH_han_143 | 5 | 8 | 0.000000000133309 |
| Helianthus annuus | HanXRQChr05 | 2 | CH_han_550 | 3 | 6 | 0.00018166 |
| Hydrangea macrophylla | Hma1.2p1_0597F.1 | 2 | CH_hma_354 | 2 | 2 | 0.000333259 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 2 | CH_lsa_181 | 4 | 6 | 0.000000107151 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 2 | CH_lsa_74 | 5 | 5 | 0.00000000000422706 |
| Magnolia biondii | Chr18 | 2 | CH_mbi_489 | 3 | 11 | 0.000265106 |
| Marchantia polymorpha | scaffold_10 | 2 | CH_mpo_39 | 3 | 3 | 0.000000365945 |
| Petunia axillaris | Peaxi162Scf00015 | 2 | CH_pax_367 | 3 | 29 | 0.000946131 |
| Populus trichocarpa | Chr18 | 2 | CH_ptr_257 | 3 | 4 | 0.00000573166 |
| Phaseolus vulgaris | Chr11 | 2 | CH_pvu_172 | 4 | 13 | 0.00000060671 |
| Salix brachista | GWHAAZH00000005 | 2 | CH_sbr_167 | 3 | 6 | 0.00000416785 |
| Solanum lycopersicum | SL4.0ch06 | 2 | CH_sly_186 | 4 | 14 | 0.000000606265 |
| Solanum pennellii | Spenn-ch06 | 2 | CH_spe_155 | 4 | 13 | 0.000000134746 |
| Solanum tuberosum | ST4.03ch06 | 2 | CH_stu_226 | 4 | 16 | 0.000000733532 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 2 | CH_tpr_138 | 3 | 3 | 0.00000141825 |
| Vitis vinifera | chr13 | 2 | CH_vvi_168 | 3 | 3 | 0.000000303754 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |