Functional clusters
Information
- Type MapMan
- Description Chromatin organisation.chromatin structure.DNA wrapping.histone (H2B)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00012 | 1 | CH_atr_82 | 4 | 17 | 0.0000000536275 |
| Camellia sinensis var. sinensis | Chr11 | 1 | CH_camsi_597 | 3 | 24 | 0.000127477 |
| Cannabis sativa | NC_044379.1 | 1 | CH_cansat_202 | 3 | 14 | 0.000047031 |
| Cannabis sativa | NC_044375.1 | 1 | CH_cansat_403 | 2 | 2 | 0.000984963 |
| Capsicum annuum | PGAv.1.6.scaffold1432 | 1 | CH_can_68 | 5 | 13 | 0.000000000113122 |
| Ceratophyllum demersum | 3 | 1 | CH_cde_207 | 3 | 17 | 0.000355381 |
| Carpinus fangiana | Cfa04 | 1 | CH_cfa_161 | 3 | 7 | 0.00000601978 |
| Citrullus lanatus | CG_Chr01 | 1 | CH_cla_17 | 5 | 15 | 0.000000000175463 |
| Cucumis melo | chr12 | 1 | CH_cme_117 | 4 | 30 | 0.00000170257 |
| Cucumis sativus L. | chr1 | 1 | CH_csa_119 | 4 | 19 | 0.000000236258 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 1 | CH_eca_44 | 5 | 9 | 0.00000000000176933 |
| Erythranthe guttata | scaffold_6 | 1 | CH_egut_217 | 3 | 5 | 0.00000445228 |
| Gossypium hirsutum | D09 | 1 | CH_ghi_226 | 4 | 8 | 0.0000000700928 |
| Gossypium hirsutum | A09 | 1 | CH_ghi_246 | 4 | 9 | 0.000000126134 |
| Glycine max | Gm11 | 1 | CH_gma_115 | 4 | 6 | 0.00000000447677 |
| Glycine max | Gm12 | 1 | CH_gma_250 | 3 | 4 | 0.00000483964 |
| Gossypium raimondii | Chr06 | 1 | CH_gra_118 | 4 | 8 | 0.0000000323611 |
| Helianthus annuus | HanXRQChr04 | 1 | CH_han_604 | 3 | 7 | 0.000256441 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 1 | CH_lsa_73 | 5 | 5 | 0.00000000000422706 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 1 | CH_lsa_91 | 6 | 20 | 0.0000000000920148 |
| Magnolia biondii | Chr14 | 1 | CH_mbi_292 | 3 | 9 | 0.0000249447 |
| Oryza sativa ssp. japonica | chr01 | 1 | CH_osa_48 | 6 | 45 | 0.000000000128299 |
| Petunia axillaris | Peaxi162Scf00114 | 1 | CH_pax_117 | 3 | 3 | 0.000000891016 |
| Physcomitrium patens | Chr17 | 1 | CH_ppa_45 | 3 | 4 | 0.00000189192 |
| Pisum sativum | chr7LG7 | 1 | CH_psa_15 | 7 | 12 | 4.34162e-16 |
| Pisum sativum | chr3LG5 | 1 | CH_psa_169 | 3 | 3 | 0.00000826126 |
| Pisum sativum | chr1LG6 | 1 | CH_psa_194 | 3 | 4 | 0.0000330306 |
| Pisum sativum | chr6LG2 | 1 | CH_psa_69 | 4 | 4 | 0.00000000452506 |
| Papaver somniferum | NW_020627707.1 | 1 | CH_pso_496 | 3 | 5 | 0.000140086 |
| Populus trichocarpa | Chr08 | 1 | CH_ptr_160 | 4 | 8 | 0.0000000289693 |
| Populus trichocarpa | Chr10 | 1 | CH_ptr_168 | 4 | 9 | 0.0000000521323 |
| Phaseolus vulgaris | Chr11 | 1 | CH_pvu_51 | 5 | 6 | 0.000000000000330468 |
| Quercus lobata | 7 | 1 | CH_qlo_390 | 4 | 11 | 0.00000004491 |
| Salvia bowleyana | GWHASIU00000002 | 1 | CH_sbo_177 | 3 | 5 | 0.000000620942 |
| Salvia bowleyana | GWHASIU00000008 | 1 | CH_sbo_454 | 2 | 2 | 0.00068247 |
| Salix brachista | GWHAAZH00000008 | 1 | CH_sbr_160 | 3 | 4 | 0.00000285847 |
| Salix brachista | GWHAAZH00000010 | 1 | CH_sbr_175 | 3 | 5 | 0.00000714478 |
| Sequoiadendron giganteum | chr9 | 1 | CH_sgi_372 | 4 | 5 | 0.00000000315554 |
| Sequoiadendron giganteum | chr6 | 1 | CH_sgi_373 | 4 | 5 | 0.00000000315554 |
| Solanum lycopersicum | SL4.0ch06 | 1 | CH_sly_273 | 3 | 5 | 0.0000289205 |
| Solanum pennellii | Spenn-ch06 | 1 | CH_spe_225 | 3 | 5 | 0.0000134968 |
| Solanum tuberosum | ST4.03ch06 | 1 | CH_stu_320 | 3 | 5 | 0.0000179142 |
| Trochodendron aralioides | group2 | 1 | CH_tar_180 | 3 | 3 | 0.00000196806 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 1 | CH_tpr_162 | 3 | 4 | 0.00000412485 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 1 | CH_tpr_43 | 4 | 5 | 0.00000000136618 |
| Vitis vinifera | chr6 | 1 | CH_vvi_152 | 3 | 3 | 0.000000086787 |
| Amborella trichopoda | AmTr_v1.0_scaffold00012 | 2 | CH_atr_82 | 4 | 17 | 0.0000000536275 |
| Camellia sinensis var. sinensis | Chr11 | 2 | CH_camsi_597 | 3 | 24 | 0.000127477 |
| Cannabis sativa | NC_044379.1 | 2 | CH_cansat_202 | 3 | 14 | 0.000047031 |
| Cannabis sativa | NC_044375.1 | 2 | CH_cansat_403 | 2 | 2 | 0.000984963 |
| Capsicum annuum | PGAv.1.6.scaffold1432 | 2 | CH_can_68 | 5 | 13 | 0.000000000113122 |
| Ceratophyllum demersum | 3 | 2 | CH_cde_207 | 3 | 17 | 0.000355381 |
| Carpinus fangiana | Cfa04 | 2 | CH_cfa_161 | 3 | 7 | 0.00000601978 |
| Citrullus lanatus | CG_Chr01 | 2 | CH_cla_17 | 5 | 15 | 0.000000000175463 |
| Cucumis melo | chr12 | 2 | CH_cme_117 | 4 | 30 | 0.00000170257 |
| Cucumis sativus L. | chr1 | 2 | CH_csa_119 | 4 | 19 | 0.000000236258 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 2 | CH_eca_44 | 5 | 9 | 0.00000000000176933 |
| Erythranthe guttata | scaffold_6 | 2 | CH_egut_217 | 3 | 5 | 0.00000445228 |
| Gossypium hirsutum | D09 | 2 | CH_ghi_226 | 4 | 8 | 0.0000000700928 |
| Gossypium hirsutum | A09 | 2 | CH_ghi_246 | 4 | 9 | 0.000000126134 |
| Glycine max | Gm11 | 2 | CH_gma_115 | 4 | 6 | 0.00000000447677 |
| Glycine max | Gm12 | 2 | CH_gma_250 | 3 | 4 | 0.00000483964 |
| Gossypium raimondii | Chr06 | 2 | CH_gra_118 | 4 | 8 | 0.0000000323611 |
| Helianthus annuus | HanXRQChr04 | 2 | CH_han_604 | 3 | 7 | 0.000256441 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 2 | CH_lsa_73 | 5 | 5 | 0.00000000000422706 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 2 | CH_lsa_91 | 6 | 20 | 0.0000000000920148 |
| Magnolia biondii | Chr14 | 2 | CH_mbi_292 | 3 | 9 | 0.0000249447 |
| Oryza sativa ssp. japonica | chr01 | 2 | CH_osa_48 | 6 | 45 | 0.000000000128299 |
| Petunia axillaris | Peaxi162Scf00114 | 2 | CH_pax_117 | 3 | 3 | 0.000000891016 |
| Physcomitrium patens | Chr17 | 2 | CH_ppa_45 | 3 | 4 | 0.00000189192 |
| Pisum sativum | chr7LG7 | 2 | CH_psa_15 | 7 | 12 | 4.34162e-16 |
| Pisum sativum | chr3LG5 | 2 | CH_psa_169 | 3 | 3 | 0.00000826126 |
| Pisum sativum | chr1LG6 | 2 | CH_psa_194 | 3 | 4 | 0.0000330306 |
| Pisum sativum | chr6LG2 | 2 | CH_psa_69 | 4 | 4 | 0.00000000452506 |
| Papaver somniferum | NW_020627707.1 | 2 | CH_pso_496 | 3 | 5 | 0.000140086 |
| Populus trichocarpa | Chr08 | 2 | CH_ptr_160 | 4 | 8 | 0.0000000289693 |
| Populus trichocarpa | Chr10 | 2 | CH_ptr_168 | 4 | 9 | 0.0000000521323 |
| Phaseolus vulgaris | Chr11 | 2 | CH_pvu_51 | 5 | 6 | 0.000000000000330468 |
| Quercus lobata | 7 | 2 | CH_qlo_390 | 4 | 11 | 0.00000004491 |
| Salvia bowleyana | GWHASIU00000002 | 2 | CH_sbo_177 | 3 | 5 | 0.000000620942 |
| Salvia bowleyana | GWHASIU00000008 | 2 | CH_sbo_454 | 2 | 2 | 0.00068247 |
| Salix brachista | GWHAAZH00000008 | 2 | CH_sbr_160 | 3 | 4 | 0.00000285847 |
| Salix brachista | GWHAAZH00000010 | 2 | CH_sbr_175 | 3 | 5 | 0.00000714478 |
| Sequoiadendron giganteum | chr9 | 2 | CH_sgi_372 | 4 | 5 | 0.00000000315554 |
| Sequoiadendron giganteum | chr6 | 2 | CH_sgi_373 | 4 | 5 | 0.00000000315554 |
| Solanum lycopersicum | SL4.0ch06 | 2 | CH_sly_273 | 3 | 5 | 0.0000289205 |
| Solanum pennellii | Spenn-ch06 | 2 | CH_spe_225 | 3 | 5 | 0.0000134968 |
| Solanum tuberosum | ST4.03ch06 | 2 | CH_stu_320 | 3 | 5 | 0.0000179142 |
| Trochodendron aralioides | group2 | 2 | CH_tar_180 | 3 | 3 | 0.00000196806 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 2 | CH_tpr_162 | 3 | 4 | 0.00000412485 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 2 | CH_tpr_43 | 4 | 5 | 0.00000000136618 |
| Vitis vinifera | chr6 | 2 | CH_vvi_152 | 3 | 3 | 0.000000086787 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |