Functional clusters
Information
- Type MapMan
- Description Chromatin organisation.chromatin structure.DNA wrapping.histone (H2A)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_7 | 1 | CH_aly_49 | 5 | 8 | 0.00000000012345 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 1 | CH_arhy_653 | 3 | 11 | 0.00050916 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.03 | 1 | CH_arhy_654 | 3 | 11 | 0.00050916 |
| Cannabis sativa | NC_044372.1 | 1 | CH_cansat_84 | 4 | 5 | 0.00000000425036 |
| Corylus avellana | 1 | 1 | CH_cav_92 | 4 | 6 | 0.0000000482311 |
| Glycine max | Gm15 | 1 | CH_gma_254 | 3 | 3 | 0.00000497029 |
| Glycine max | Gm13 | 1 | CH_gma_400 | 3 | 7 | 0.000173729 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 1 | CH_lsa_136 | 5 | 12 | 0.00000000701743 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 1 | CH_lsa_356 | 3 | 4 | 0.0000712171 |
| Medicago truncatula | chr7 | 1 | CH_mtr_427 | 3 | 3 | 0.00000829542 |
| Medicago truncatula | chr2 | 1 | CH_mtr_487 | 3 | 4 | 0.0000331682 |
| Pisum sativum | chr5LG3 | 1 | CH_psa_185 | 3 | 3 | 0.000018347 |
| Pisum sativum | chr7LG7 | 1 | CH_psa_186 | 3 | 3 | 0.000018347 |
| Pisum sativum | chr2LG1 | 1 | CH_psa_187 | 3 | 3 | 0.000018347 |
| Pisum sativum | chr5LG3 | 1 | CH_psa_9 | 7 | 7 | 4.17355e-18 |
| Papaver somniferum | NC_039358.1 | 1 | CH_pso_144 | 5 | 9 | 0.0000000012151 |
| Papaver somniferum | NC_039360.1 | 1 | CH_pso_187 | 4 | 4 | 0.0000000156014 |
| Papaver somniferum | NW_020651082.1 | 1 | CH_pso_638 | 3 | 6 | 0.00049404 |
| Papaver somniferum | NW_020628818.1 | 1 | CH_pso_99 | 6 | 11 | 0.00000000000270809 |
| Phaseolus vulgaris | scaffold_15 | 1 | CH_pvu_110 | 4 | 6 | 0.000000017856 |
| Sequoiadendron giganteum | chr2 | 1 | CH_sgi_496 | 4 | 4 | 0.0000000516793 |
| Sequoiadendron giganteum | chr5 | 1 | CH_sgi_636 | 5 | 26 | 0.00000333602 |
| Sequoiadendron giganteum | chr6 | 1 | CH_sgi_72 | 9 | 9 | 3.98698e-23 |
| Solanum lycopersicum | SL4.0ch05 | 1 | CH_sly_6 | 12 | 17 | 3.56166e-30 |
| Solanum pennellii | Spenn-ch05 | 1 | CH_spe_30 | 6 | 6 | 3.95503e-16 |
| Solanum tuberosum | ST4.03ch05 | 1 | CH_stu_26 | 8 | 11 | 5.21342e-20 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 1 | CH_tpr_52 | 4 | 5 | 0.00000000465108 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_166 | 3 | 3 | 0.00000589355 |
| Vigna mungo | CM024079.1 | 1 | CH_vmu_120 | 3 | 3 | 0.00000103334 |
| Vitis vinifera | chr7 | 1 | CH_vvi_124 | 4 | 5 | 0.0000000120104 |
| Zea mays | 10 | 1 | CH_zma_62 | 4 | 4 | 0.000000032988 |
| Arabidopsis lyrata | scaffold_7 | 2 | CH_aly_49 | 5 | 8 | 0.00000000012345 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 2 | CH_arhy_653 | 3 | 11 | 0.00050916 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.03 | 2 | CH_arhy_654 | 3 | 11 | 0.00050916 |
| Cannabis sativa | NC_044372.1 | 2 | CH_cansat_84 | 4 | 5 | 0.00000000425036 |
| Corylus avellana | 1 | 2 | CH_cav_92 | 4 | 6 | 0.0000000482311 |
| Glycine max | Gm15 | 2 | CH_gma_254 | 3 | 3 | 0.00000497029 |
| Glycine max | Gm13 | 2 | CH_gma_400 | 3 | 7 | 0.000173729 |
| Lotus japonicus | chr3 | 2 | CH_lja_189 | 3 | 3 | 0.00000219371 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 2 | CH_lsa_136 | 5 | 12 | 0.00000000701743 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 2 | CH_lsa_356 | 3 | 4 | 0.0000712171 |
| Pisum sativum | chr5LG3 | 2 | CH_psa_185 | 3 | 3 | 0.000018347 |
| Pisum sativum | chr7LG7 | 2 | CH_psa_186 | 3 | 3 | 0.000018347 |
| Pisum sativum | chr2LG1 | 2 | CH_psa_187 | 3 | 3 | 0.000018347 |
| Pisum sativum | chr5LG3 | 2 | CH_psa_9 | 7 | 7 | 4.17355e-18 |
| Papaver somniferum | NC_039358.1 | 2 | CH_pso_144 | 5 | 9 | 0.0000000012151 |
| Papaver somniferum | NC_039360.1 | 2 | CH_pso_187 | 4 | 4 | 0.0000000156014 |
| Papaver somniferum | NW_020651082.1 | 2 | CH_pso_638 | 3 | 6 | 0.00049404 |
| Papaver somniferum | NW_020628818.1 | 2 | CH_pso_99 | 6 | 11 | 0.00000000000270809 |
| Phaseolus vulgaris | scaffold_15 | 2 | CH_pvu_110 | 4 | 6 | 0.000000017856 |
| Sequoiadendron giganteum | chr2 | 2 | CH_sgi_496 | 4 | 4 | 0.0000000516793 |
| Sequoiadendron giganteum | chr5 | 2 | CH_sgi_636 | 5 | 26 | 0.00000333602 |
| Sequoiadendron giganteum | chr6 | 2 | CH_sgi_72 | 9 | 9 | 3.98698e-23 |
| Solanum lycopersicum | SL4.0ch05 | 2 | CH_sly_6 | 12 | 17 | 3.56166e-30 |
| Solanum pennellii | Spenn-ch05 | 2 | CH_spe_30 | 6 | 6 | 3.95503e-16 |
| Solanum tuberosum | ST4.03ch05 | 2 | CH_stu_26 | 8 | 11 | 5.21342e-20 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 2 | CH_tpr_52 | 4 | 5 | 0.00000000465108 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_166 | 3 | 3 | 0.00000589355 |
| Vigna mungo | CM024079.1 | 2 | CH_vmu_120 | 3 | 3 | 0.00000103334 |
| Vitis vinifera | chr7 | 2 | CH_vvi_124 | 4 | 5 | 0.0000000120104 |
| Zea mays | 10 | 2 | CH_zma_62 | 4 | 4 | 0.000000032988 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |