Functional clusters
Information
- Type MapMan
- Description Chromatin organisation.chromatin structure.DNA wrapping.histone (H3)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_228 | 1 | CH_aag_64 | 3 | 11 | 0.0000318518 |
| Aethionema arabicum | LG-3 | 1 | CH_aar_110 | 3 | 5 | 0.0000104827 |
| Acer truncatum | chr3 | 1 | CH_acertr_72 | 4 | 7 | 0.00000000257426 |
| Actinidia chinensis | Lachesis_group9 | 1 | CH_ach_239 | 2 | 2 | 0.000543213 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_4 | 1 | CH_amhyb_56 | 3 | 3 | 0.000000892804 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.17 | 1 | CH_arhy_445 | 3 | 11 | 0.0000633812 |
| Cannabis sativa | NC_044372.1 | 1 | CH_cansat_187 | 4 | 41 | 0.0000281618 |
| Cicer arietinum L. | Ca_LG2_v3 | 1 | CH_car_51 | 4 | 13 | 0.000000211962 |
| Citrus clementina | scaffold_2 | 1 | CH_ccl_472 | 3 | 21 | 0.000749173 |
| Carica papaya | supercontig_84 | 1 | CH_cpa_83 | 3 | 4 | 0.000000542215 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3876 | 1 | CH_cqu_101 | 4 | 4 | 0.00000000191012 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1566 | 1 | CH_cqu_255 | 3 | 3 | 0.00000447901 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2702 | 1 | CH_cqu_284 | 3 | 4 | 0.0000179099 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2127 | 1 | CH_cqu_304 | 3 | 5 | 0.0000447594 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 1 | CH_eca_219 | 3 | 4 | 0.00000821321 |
| Erigeron canadensis | Conyza_canadensis_scaffold:8 | 1 | CH_eca_97 | 4 | 6 | 0.00000000967229 |
| Gossypium hirsutum | A10 | 1 | CH_ghi_381 | 3 | 3 | 0.00000480729 |
| Gossypium hirsutum | D10 | 1 | CH_ghi_382 | 3 | 3 | 0.00000480729 |
| Helianthus annuus | HanXRQChr05 | 1 | CH_han_184 | 4 | 4 | 0.0000000062255 |
| Hydrangea macrophylla | Hma1.2p1_0728F.1 | 1 | CH_hma_26 | 4 | 6 | 0.000000000925196 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 1 | CH_lsa_261 | 3 | 3 | 0.00000451799 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 1 | CH_lsa_75 | 5 | 6 | 0.00000000000486909 |
| Malus domestica | Chr11 | 1 | CH_mdo_402 | 3 | 8 | 0.0000549099 |
| Oryza sativa ssp. japonica | chr06 | 1 | CH_osa_161 | 3 | 6 | 0.00000702574 |
| Petunia axillaris | Peaxi162Scf00058 | 1 | CH_pax_56 | 4 | 6 | 0.00000000516973 |
| Pisum sativum | chr7LG7 | 1 | CH_psa_177 | 3 | 3 | 0.0000106123 |
| Pisum sativum | chr2LG1 | 1 | CH_psa_199 | 3 | 4 | 0.0000424289 |
| Pisum sativum | chr3LG5 | 1 | CH_psa_43 | 5 | 7 | 0.000000000076646 |
| Pisum sativum | chr7LG7 | 1 | CH_psa_89 | 4 | 5 | 0.0000000318167 |
| Quercus lobata | 1 | 1 | CH_qlo_297 | 4 | 6 | 0.0000000020431 |
| Quercus lobata | 5 | 1 | CH_qlo_478 | 3 | 3 | 0.000000659739 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 1 | CH_rch_340 | 4 | 17 | 0.0000010735 |
| Rhododendron simsii | chr07 | 1 | CH_rsi_264 | 3 | 4 | 0.00000549556 |
| Solanum pennellii | Spenn-ch01 | 1 | CH_spe_121 | 5 | 30 | 0.000000012499 |
| Solanum tuberosum | ST4.03ch01 | 1 | CH_stu_308 | 4 | 31 | 0.0000126378 |
| Theobroma cacao | Chromosome_1 | 1 | CH_tca_379 | 3 | 19 | 0.000435402 |
| Anthoceros agrestis | Sc2ySwM_228 | 2 | CH_aag_64 | 3 | 11 | 0.0000318518 |
| Aethionema arabicum | LG-3 | 2 | CH_aar_110 | 3 | 5 | 0.0000104827 |
| Acer truncatum | chr3 | 2 | CH_acertr_72 | 4 | 7 | 0.00000000257426 |
| Actinidia chinensis | Lachesis_group9 | 2 | CH_ach_239 | 2 | 2 | 0.000543213 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_4 | 2 | CH_amhyb_56 | 3 | 3 | 0.000000892804 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.17 | 2 | CH_arhy_445 | 3 | 11 | 0.0000633812 |
| Cannabis sativa | NC_044372.1 | 2 | CH_cansat_187 | 4 | 41 | 0.0000281618 |
| Cicer arietinum L. | Ca_LG2_v3 | 2 | CH_car_51 | 4 | 13 | 0.000000211962 |
| Citrus clementina | scaffold_2 | 2 | CH_ccl_472 | 3 | 21 | 0.000749173 |
| Carica papaya | supercontig_84 | 2 | CH_cpa_83 | 3 | 4 | 0.000000542215 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3876 | 2 | CH_cqu_101 | 4 | 4 | 0.00000000191012 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1566 | 2 | CH_cqu_255 | 3 | 3 | 0.00000447901 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2702 | 2 | CH_cqu_284 | 3 | 4 | 0.0000179099 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2127 | 2 | CH_cqu_304 | 3 | 5 | 0.0000447594 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 2 | CH_eca_219 | 3 | 4 | 0.00000821321 |
| Erigeron canadensis | Conyza_canadensis_scaffold:8 | 2 | CH_eca_97 | 4 | 6 | 0.00000000967229 |
| Gossypium hirsutum | A10 | 2 | CH_ghi_381 | 3 | 3 | 0.00000480729 |
| Gossypium hirsutum | D10 | 2 | CH_ghi_382 | 3 | 3 | 0.00000480729 |
| Helianthus annuus | HanXRQChr05 | 2 | CH_han_184 | 4 | 4 | 0.0000000062255 |
| Hydrangea macrophylla | Hma1.2p1_0728F.1 | 2 | CH_hma_26 | 4 | 6 | 0.000000000925196 |
| Lotus japonicus | chr6 | 2 | CH_lja_242 | 4 | 25 | 0.0000532672 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 2 | CH_lsa_261 | 3 | 3 | 0.00000451799 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 2 | CH_lsa_75 | 5 | 6 | 0.00000000000486909 |
| Malus domestica | Chr11 | 2 | CH_mdo_402 | 3 | 8 | 0.0000549099 |
| Oryza sativa ssp. japonica | chr06 | 2 | CH_osa_161 | 3 | 6 | 0.00000702574 |
| Petunia axillaris | Peaxi162Scf00058 | 2 | CH_pax_56 | 4 | 6 | 0.00000000516973 |
| Pisum sativum | chr7LG7 | 2 | CH_psa_177 | 3 | 3 | 0.0000106123 |
| Pisum sativum | chr2LG1 | 2 | CH_psa_199 | 3 | 4 | 0.0000424289 |
| Pisum sativum | chr3LG5 | 2 | CH_psa_43 | 5 | 7 | 0.000000000076646 |
| Pisum sativum | chr7LG7 | 2 | CH_psa_89 | 4 | 5 | 0.0000000318167 |
| Quercus lobata | 1 | 2 | CH_qlo_297 | 4 | 6 | 0.0000000020431 |
| Quercus lobata | 5 | 2 | CH_qlo_478 | 3 | 3 | 0.000000659739 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 2 | CH_rch_340 | 4 | 17 | 0.0000010735 |
| Rhododendron simsii | chr07 | 2 | CH_rsi_264 | 3 | 4 | 0.00000549556 |
| Solanum pennellii | Spenn-ch01 | 2 | CH_spe_121 | 5 | 30 | 0.000000012499 |
| Solanum tuberosum | ST4.03ch01 | 2 | CH_stu_308 | 4 | 31 | 0.0000126378 |
| Theobroma cacao | Chromosome_1 | 2 | CH_tca_379 | 3 | 19 | 0.000435402 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |