Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p31660 Brassica napus
A05p02320 Brassica napus
Aa31LG1G23520 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1154 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.1984 Anthoceros agrestis
Actinidia09297 Actinidia chinensis
Actinidia39194 Actinidia chinensis
Ah.13g076790 Amaranthus hybridus
AL3G43260 Arabidopsis lyrata
AL4G39590 Arabidopsis lyrata
Aqoxy3G00063 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6W6BYV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y8CJQK Arachis hypogaea
AT2G05720 Arabidopsis thaliana
AT2G41500 Arabidopsis thaliana
ATR0665G145 Amborella trichopoda
Atru.chr1.1191 Acer truncatum
Atru.chr1.1192 Acer truncatum
Atru.chr6.1378 Acer truncatum
Atru.chr6.1379 Acer truncatum
Atru.chr6.1380 Acer truncatum
AUR62024528 Chenopodium quinoa
AUR62026120 Chenopodium quinoa
BcaB06g29187 Brassica carinata
BcaC01g05332 Brassica carinata
BcaC02g12784 Brassica carinata
BcaC02g12785 Brassica carinata
BcaNung04071 Brassica carinata
BcaNung04072 Brassica carinata
BcaNung06794 Brassica carinata
BolC3t15153H Brassica oleracea
BolC4t21916H Brassica oleracea
BolC4t28406H Brassica oleracea
BolC5t34692H Brassica oleracea
BraA04t18624Z Brassica rapa
BraA05t19227Z Brassica rapa
C03p27810 Brassica napus
C04p02760 Brassica napus
C04p69090 Brassica napus
CAN.G1237.4 Capsicum annuum
CANSAT80G0359 Cannabis sativa
CANSAT80G2101 Cannabis sativa
CARHR136620 Cardamine hirsuta
Carub.0004s0611 Capsella rubella
Carub.0004s2380 Capsella rubella
Carub.0004s2413 Capsella rubella
Ca_25791_v3 Cicer arietinum L.
CBR_g723 Chara braunii
Cc06_g18350 Coffea canephora
CDE04G0356 Ceratophyllum demersum
Cfa024100 Carpinus fangiana
Ciclev10006458m.g Citrus clementina
CiPaw.09G042100 Carya illinoinensis
ClCG08G008940 Citrullus lanatus
COL.COLO4_13929 Corchorus olitorius
COL.COLO4_24957 Corchorus olitorius
Cpa.g.sc120.6 Carica papaya
Cre16.g662800 Chlamydomonas reinhardtii
CsaV3_6G036200 Cucumis sativus L.
CSS0037940 Camellia sinensis var. sinensis
CSS0048368 Camellia sinensis var. sinensis
DCAR_014011 Daucus carota
Dinv30299 Davidia involucrata
Duzib132G0222 Durio zibethinus
Duzib248G1450 Durio zibethinus
ECA234G2577 Erigeron canadensis
EL10Ac3g07157 Beta vulgaris
Eucgr.A02297 Eucalyptus grandis
FAN01G0512 Fragaria x ananassa
FAN02G3905 Fragaria x ananassa
FAN03G0195 Fragaria x ananassa
FAN05G0107 Fragaria x ananassa
FAN06G0994 Fragaria x ananassa
FAN07G1748 Fragaria x ananassa
FAN09G0054 Fragaria x ananassa
FAN09G4382 Fragaria x ananassa
FAN10G2664 Fragaria x ananassa
FAN13G2401 Fragaria x ananassa
FAN14G4828 Fragaria x ananassa
FAN14G5922 Fragaria x ananassa
FAN16G0989 Fragaria x ananassa
FAN17G0086 Fragaria x ananassa
FAN17G3014 Fragaria x ananassa
FAN19G1783 Fragaria x ananassa
FAN22G1757 Fragaria x ananassa
FAN23G2202 Fragaria x ananassa
FAN24G0290 Fragaria x ananassa
FAN25G1774 Fragaria x ananassa
FAN27G3180 Fragaria x ananassa
FAN28G1931 Fragaria x ananassa
FvH4_6g24750 Fragaria vesca
Glyma.02G190600 Glycine max
Glyma.10G000800 Glycine max
Gohir.A12G015000 Gossypium hirsutum
Gohir.D12G015400 Gossypium hirsutum
Gorai.008G015500 Gossypium raimondii
GSVIVG01033551001 Vitis vinifera
HanXRQChr17g0566661 Helianthus annuus
Haze_19749 Corylus avellana
Haze_19776 Corylus avellana
Hma1.2p1_0338F.1_g129500 Hydrangea macrophylla
Hma1.2p1_1333F.1_g276240 Hydrangea macrophylla
Hma1.2p1_2162F.1_g315680 Hydrangea macrophylla
HPP92_010189 Vanilla planifolia
Hund19126 Selenicereus undatus
Lalb_Chr21g0305241 Lupinus albus
Lj4A34T49 Lonicera japonica
Lj4C34T1 Lonicera japonica
Lj5g0008946 Lotus japonicus
Lsat_1_v5_gn_4_41600 Lactuca sativa
Lsat_1_v5_gn_8_113721 Lactuca sativa
Manes.09G015900 Manihot esculenta
Mapoly0014s0154 Marchantia polymorpha
Mapoly0061s0123 Marchantia polymorpha
MBI13_g04793_MAGBIO Magnolia biondii
MCO12G002 Micromonas commoda
MD12G1086300 Malus domestica
MD14G1080500 Malus domestica
Medtr0012s0110 Medicago truncatula
Medtr3g045130 Medicago truncatula
Medtr5g022690 Medicago truncatula
MELO3C019777.2 Cucumis melo
MELO3C019779.2 Cucumis melo
MELO3C026433.2 Cucumis melo
Migut.J01707 Erythranthe guttata
MSTRG.6401 Avicennia marina
Nitab4.5_0000826g0140 Nicotiana tabacum
Nitab4.5_0001618g0260 Nicotiana tabacum
Nn7g37752 Nelumbo nucifera
Oeu023136.1 Olea europaea
Os03g0355200 Oryza sativa ssp. japonica
Os03g0355400 Oryza sativa ssp. japonica
Peaxi162Scf00130g00929 Petunia axillaris
Peaxi162Scf00177g10117 Petunia axillaris
PGR004G0521 Punica granatum
PGSC0003DMG400012703 Solanum tuberosum
Phvul.007G249600 Phaseolus vulgaris
Potri.006G045800 Populus trichocarpa
Potri.016G042250 Populus trichocarpa
Pp3c9_11970 Physcomitrium patens
PRCOL_00003365 Prasinoderma coloniale
Prupe.7G050300 Prunus persica
Psat4g106880 Pisum sativum
Psat6g009840 Pisum sativum
Psat6g118240 Pisum sativum
PSO063G3048 Papaver somniferum
PSO832G3057 Papaver somniferum
QL04p089213 Quercus lobata
QL05p082994 Quercus lobata
QL07p005224 Quercus lobata
RcHm_v2.0_Chr3g0484331 Rosa chinensis
RcHm_v2.0_Chr3g0484401 Rosa chinensis
RcHm_v2.0_Chr3g0484501 Rosa chinensis
Rhsim03G0032000 Rhododendron simsii
Sabra06G0031300 Salix brachista
SalBow6G0945 Salvia bowleyana
Sc19g0008460 Simmondsia chinensis
Sed0000547 Sechium edule
Sed0002463 Sechium edule
SEGI_17823 Sequoiadendron giganteum
SGA_v2.0_scaffold296G47577 Striga asiatica
SGA_v2.0_scaffold69G23129 Striga asiatica
SMO356G0612 Selaginella moellendorffii
Solyc04g016510.3 Solanum lycopersicum
Sopen04g008580 Solanum pennellii
Sp4g23770 Schrenkiella parvula
TAR065G0002 Trochodendron aralioides
TAR065G0005 Trochodendron aralioides
TAR369G0628 Trochodendron aralioides
THA.LOC104824426 Tarenaya hassleriana
Thecc.02G139000 Theobroma cacao
Thhalv10000860m.g Eutrema salsugineum
Thhalv10016457m.g Eutrema salsugineum
TPR.G10246 Trifolium pratense
TPR.G1512 Trifolium pratense
TPR.G1899 Trifolium pratense
TWI74G0834 Tripterygium wilfordii
unitig_44.g31550 Utricularia gibba
unitig_578.g16292 Utricularia gibba
vmacro06312 Vaccinium macrocarpon
vmacro21947 Vaccinium macrocarpon
VMungo0540G1675 Vigna mungo
VMungo0720G2842 Vigna mungo
Zm00001eb017050 Zea mays
Zm00001eb088400 Zea mays
Zm00001eb344450 Zea mays

User provided reference genes

Program Settings