Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p28600 Brassica napus
A07p17700 Brassica napus
A07p38150 Brassica napus
A09p42060 Brassica napus
Aa31LG1G14660 Aethionema arabicum
Aa31LG4G8630 Aethionema arabicum
Aa31LG6G8830 Aethionema arabicum
Aa31LG7G6570 Aethionema arabicum
Aa31LG9G14860 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.3361 Anthoceros agrestis
Actinidia29422 Actinidia chinensis
Ah.05g178110 Amaranthus hybridus
AL1G36210 Arabidopsis lyrata
AL1G50500 Arabidopsis lyrata
AL2G31590 Arabidopsis lyrata
AL6G43110 Arabidopsis lyrata
AL6G46580 Arabidopsis lyrata
AL8G45430 Arabidopsis lyrata
Aqoxy5G02454 Aquilegia oxysepala
Aqoxy6G02242 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5KAB8G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UPMJ8W Arachis hypogaea
AT1G22670 Arabidopsis thaliana
AT1G35625 Arabidopsis thaliana
AT1G35630 Arabidopsis thaliana
AT1G71980 Arabidopsis thaliana
AT4G09560 Arabidopsis thaliana
AT5G66160 Arabidopsis thaliana
ATR0071G008 Amborella trichopoda
ATR0579G081 Amborella trichopoda
Atru.chr13.1734 Acer truncatum
AUR62004638 Chenopodium quinoa
AUR62022698 Chenopodium quinoa
BcaB01g02787 Brassica carinata
BcaB02g10047 Brassica carinata
BcaB03g14920 Brassica carinata
BcaC01g04714 Brassica carinata
BcaC06g34683 Brassica carinata
BcaC08g46642 Brassica carinata
BolC3t15770H Brassica oleracea
BolC5t30874H Brassica oleracea
BolC6t39661H Brassica oleracea
BolC7t43083H Brassica oleracea
BraA03t12061Z Brassica rapa
BraA07t29492Z Brassica rapa
BraA07t31380Z Brassica rapa
BraA09t39692Z Brassica rapa
C03p34590 Brassica napus
C05p21810 Brassica napus
C06p46080 Brassica napus
C07p25650 Brassica napus
CAN.G199.3 Capsicum annuum
CAN.G2.15 Capsicum annuum
CANSAT25G0450 Cannabis sativa
CANSAT56G4465 Cannabis sativa
CANSAT80G1511 Cannabis sativa
CARHR034430 Cardamine hirsuta
CARHR064800 Cardamine hirsuta
CARHR260430 Cardamine hirsuta
CARHR281580 Cardamine hirsuta
Carub.0001s2219 Capsella rubella
Carub.0001s3322 Capsella rubella
Carub.0002s1876 Capsella rubella
Carub.0006s2801 Capsella rubella
Carub.0008s2834 Capsella rubella
Ca_10623_v3 Cicer arietinum L.
Cc00_g04600 Coffea canephora
CDE02G2308 Ceratophyllum demersum
CDE08G0668 Ceratophyllum demersum
Cfa013843 Carpinus fangiana
Ciclev10001161m.g Citrus clementina
Ciclev10001992m.g Citrus clementina
Ciclev10025842m.g Citrus clementina
CiPaw.07G060000 Carya illinoinensis
CiPaw.07G160600 Carya illinoinensis
CiPaw.08G058700 Carya illinoinensis
ClCG11G008080 Citrullus lanatus
COL.COLO4_22445 Corchorus olitorius
COL.COLO4_38509 Corchorus olitorius
Cpa.g.sc6.270 Carica papaya
Cpa.g.sc66.32 Carica papaya
Cpa.g.sc97.1 Carica papaya
Cre16.g680117 Chlamydomonas reinhardtii
CsaV3_2G033530 Cucumis sativus L.
CSS0004502 Camellia sinensis var. sinensis
CSS0017715 Camellia sinensis var. sinensis
CSS0030759 Camellia sinensis var. sinensis
DCAR_001056 Daucus carota
Dinv15071 Davidia involucrata
Dinv40098 Davidia involucrata
Dinv40103 Davidia involucrata
Duzib116G0724 Durio zibethinus
Duzib147G0432 Durio zibethinus
Duzib177G0003 Durio zibethinus
ECA232G0607 Erigeron canadensis
ECA236G1926 Erigeron canadensis
EL10Ac1g00091 Beta vulgaris
Eucgr.F02605 Eucalyptus grandis
Eucgr.F02606 Eucalyptus grandis
Eucgr.F03975 Eucalyptus grandis
Eucgr.J02193 Eucalyptus grandis
Eucgr.J02202 Eucalyptus grandis
Eucgr.K02156 Eucalyptus grandis
Eucgr.L00781 Eucalyptus grandis
FAN04G1067 Fragaria x ananassa
FAN08G0066 Fragaria x ananassa
FAN13G0197 Fragaria x ananassa
FAN18G0215 Fragaria x ananassa
FAN19G1969 Fragaria x ananassa
FAN23G2284 Fragaria x ananassa
FAN28G1663 Fragaria x ananassa
FvH4_1g11650 Fragaria vesca
FvH4_5g30950 Fragaria vesca
Glyma.06G243000 Glycine max
Glyma.10G217500 Glycine max
Glyma.20G174500 Glycine max
Gohir.A02G171500 Gossypium hirsutum
Gohir.A05G274300 Gossypium hirsutum
Gohir.A09G116100 Gossypium hirsutum
Gohir.A11G174300 Gossypium hirsutum
Gohir.D03G008600 Gossypium hirsutum
Gohir.D05G276500 Gossypium hirsutum
Gohir.D09G113200 Gossypium hirsutum
Gohir.D11G181500 Gossypium hirsutum
Gorai.003G008800 Gossypium raimondii
Gorai.006G130700 Gossypium raimondii
Gorai.007G193300 Gossypium raimondii
Gorai.009G289500 Gossypium raimondii
GSVIVG01018761001 Vitis vinifera
GSVIVG01034782001 Vitis vinifera
HanXRQChr09g0260541 Helianthus annuus
HanXRQChr11g0326091 Helianthus annuus
Haze_03747 Corylus avellana
Haze_22515 Corylus avellana
Haze_27173 Corylus avellana
Hma1.2p1_0937F.1_g239050 Hydrangea macrophylla
HPP92_000077 Vanilla planifolia
HPP92_003140 Vanilla planifolia
HPP92_026021 Vanilla planifolia
HPP92_027738 Vanilla planifolia
Hund16794 Selenicereus undatus
Hund27090 Selenicereus undatus
Lalb_Chr02g0141741 Lupinus albus
Lalb_Chr06g0161971 Lupinus albus
Lalb_Chr21g0305711 Lupinus albus
Lj4A221T33 Lonicera japonica
Lj5g0007708 Lotus japonicus
Lj7C291G2 Lonicera japonica
Lsat_1_v5_gn_1_10041 Lactuca sativa
Lsat_1_v5_gn_4_135980 Lactuca sativa
Manes.01G148000 Manihot esculenta
Manes.02G106700 Manihot esculenta
Manes.02G192600 Manihot esculenta
Manes.18G102200 Manihot esculenta
Mapoly0055s0017 Marchantia polymorpha
Mapoly0150s0014 Marchantia polymorpha
MCO09G135 Micromonas commoda
MCO09G473 Micromonas commoda
MD02G1129600 Malus domestica
MD08G1219500 Malus domestica
MD15G1243900 Malus domestica
MD15G1408100 Malus domestica
Medtr1g096780 Medicago truncatula
MELO3C008126.2 Cucumis melo
Migut.C01260 Erythranthe guttata
Migut.I00392 Erythranthe guttata
Migut.N03352 Erythranthe guttata
MSTRG.14308 Avicennia marina
MSTRG.22457 Avicennia marina
Nitab4.5_0000167g0070 Nicotiana tabacum
Nitab4.5_0000303g0210 Nicotiana tabacum
Nitab4.5_0001579g0130 Nicotiana tabacum
Nitab4.5_0006657g0030 Nicotiana tabacum
Nn1g08369 Nelumbo nucifera
Nn5g27661 Nelumbo nucifera
Nn5g30731 Nelumbo nucifera
Oeu000546.1 Olea europaea
Oeu007835.1 Olea europaea
Oeu017885.1 Olea europaea
Oeu025522.1 Olea europaea
Os03g0167500 Oryza sativa ssp. japonica
Os08g0104300 Oryza sativa ssp. japonica
Peaxi162Scf00268g01019 Petunia axillaris
Peaxi162Scf01013g00126 Petunia axillaris
PGR042G0216 Punica granatum
PGSC0003DMG400026112 Solanum tuberosum
Phvul.007G088600 Phaseolus vulgaris
Potri.005G111100 Populus trichocarpa
Potri.013G111500 Populus trichocarpa
Potri.019G082500 Populus trichocarpa
Pp3c10_8120 Physcomitrium patens
Pp3c16_18860 Physcomitrium patens
Pp3c1_34410 Physcomitrium patens
Pp3c25_6520 Physcomitrium patens
Pp3c6_7790 Physcomitrium patens
PRCOL_00005894 Prasinoderma coloniale
Prupe.1G553100 Prunus persica
Prupe.7G170000 Prunus persica
Psat6g187960 Pisum sativum
PSO017G0914 Papaver somniferum
PSO063G0997 Papaver somniferum
PSO675G7719 Papaver somniferum
QL02p033417 Quercus lobata
QL06p050811 Quercus lobata
RcHm_v2.0_Chr2g0099241 Rosa chinensis
RcHm_v2.0_Chr7g0226311 Rosa chinensis
Rhsim06G0094500 Rhododendron simsii
Rhsim11G0058100 Rhododendron simsii
Rhsim11G0058300 Rhododendron simsii
Sabra05G0091100 Salix brachista
Sabra13G0095000 Salix brachista
Sabra19G0094100 Salix brachista
Sc01g0001810 Simmondsia chinensis
Sed0007097 Sechium edule
Sed0017023 Sechium edule
SEGI_00608 Sequoiadendron giganteum
SEGI_05553 Sequoiadendron giganteum
SEGI_18656 Sequoiadendron giganteum
SEGI_21597 Sequoiadendron giganteum
SEGI_38165 Sequoiadendron giganteum
SEGI_38938 Sequoiadendron giganteum
SGA_v2.0_scaffold24G10558 Striga asiatica
SGA_v2.0_scaffold25G11068 Striga asiatica
SMO117G0303 Selaginella moellendorffii
SMO199G0066 Selaginella moellendorffii
SMO361G0002 Selaginella moellendorffii
SMO367G0751 Selaginella moellendorffii
Solyc06g065330.4 Solanum lycopersicum
Solyc11g019930.2 Solanum lycopersicum
Sopen06g023820 Solanum pennellii
Sopen11g010050 Solanum pennellii
Sp1g20180 Schrenkiella parvula
Sp1g30350 Schrenkiella parvula
Sp2g30530 Schrenkiella parvula
Sp5g27050 Schrenkiella parvula
Sp6g08070 Schrenkiella parvula
TAR381G1206 Trochodendron aralioides
TAR624G1152 Trochodendron aralioides
TAR628G0062 Trochodendron aralioides
THA.LOC104809740 Tarenaya hassleriana
THA.LOC104810561 Tarenaya hassleriana
THA.LOC104821332 Tarenaya hassleriana
Thecc.01G016400 Theobroma cacao
Thecc.08G184700 Theobroma cacao
Thhalv10004724m.g Eutrema salsugineum
Thhalv10009890m.g Eutrema salsugineum
Thhalv10018545m.g Eutrema salsugineum
Thhalv10028665m.g Eutrema salsugineum
TPR.G15722 Trifolium pratense
TPR.G35031 Trifolium pratense
TWI09G1225 Tripterygium wilfordii
TWI32G0520 Tripterygium wilfordii
unitig_0.g2132 Utricularia gibba
vmacro00762 Vaccinium macrocarpon
vmacro12485 Vaccinium macrocarpon
VMungo0720G1733 Vigna mungo
Zm00001eb031640 Zea mays
Zm00001eb174370 Zea mays
Zm00001eb260120 Zea mays
Zm00001eb420070 Zea mays

User provided reference genes

Program Settings