Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p46130 Brassica napus
A06p07430 Brassica napus
A07p04210 Brassica napus
A09p64950 Brassica napus
Aa31LG1G4290 Aethionema arabicum
Aa31LG8G14100 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.2761 Anthoceros agrestis
Ah.01g008250 Amaranthus hybridus
Ah.03g132740 Amaranthus hybridus
AL1G21460 Arabidopsis lyrata
AL3G49670 Arabidopsis lyrata
Aqoxy2G01591 Aquilegia oxysepala
Aqoxy3G01043 Aquilegia oxysepala
Aqoxy4G02705 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2R11L5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BX85EM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GJBP3C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JV7126 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W4LCKL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WQ9MHI Arachis hypogaea
AT1G10610 Arabidopsis thaliana
AT2G16910 Arabidopsis thaliana
ATR0304G010 Amborella trichopoda
ATR0304G020 Amborella trichopoda
ATR0304G022 Amborella trichopoda
ATR0304G028 Amborella trichopoda
ATR0304G036 Amborella trichopoda
ATR0304G046 Amborella trichopoda
ATR0304G053 Amborella trichopoda
ATR0304G064 Amborella trichopoda
ATR1155G019 Amborella trichopoda
ATR1155G029 Amborella trichopoda
Atru.chr11.2041 Acer truncatum
Atru.chr11.2042 Acer truncatum
Atru.chr5.3376 Acer truncatum
AUR62005387 Chenopodium quinoa
AUR62010033 Chenopodium quinoa
AUR62010034 Chenopodium quinoa
AUR62013021 Chenopodium quinoa
AUR62013022 Chenopodium quinoa
AUR62014049 Chenopodium quinoa
BcaB03g16426 Brassica carinata
BcaB08g34676 Brassica carinata
BcaB08g37364 Brassica carinata
BcaC01g02972 Brassica carinata
BcaC05g24857 Brassica carinata
BcaC05g24950 Brassica carinata
BcaC06g36193 Brassica carinata
BcaC07g41810 Brassica carinata
BolC3t18036H Brassica oleracea
BolC5t29641H Brassica oleracea
BolC7t41091H Brassica oleracea
BolC8t52411H Brassica oleracea
BraA03t13741Z Brassica rapa
BraA06t23947Z Brassica rapa
BraA07t28212Z Brassica rapa
BraA09t41838Z Brassica rapa
C03p57610 Brassica napus
C04p10110 Brassica napus
C05p08930 Brassica napus
C07p06690 Brassica napus
C08p48720 Brassica napus
CAN.G1731.6 Capsicum annuum
CAN.G432.3 Capsicum annuum
CAN.G46.2 Capsicum annuum
CAN.G682.3 Capsicum annuum
CANSAT25G3111 Cannabis sativa
CARHR010780 Cardamine hirsuta
CARHR107170 Cardamine hirsuta
CARHR107180 Cardamine hirsuta
CARHR107200 Cardamine hirsuta
Carub.0001s1008 Capsella rubella
Carub.0003s3072 Capsella rubella
Ca_22711_v3 Cicer arietinum L.
Cc01_g16050 Coffea canephora
Cc04_g12140 Coffea canephora
CDE02G0907 Ceratophyllum demersum
CDE06G0952 Ceratophyllum demersum
Cfa005256 Carpinus fangiana
Cfa009154 Carpinus fangiana
Ciclev10030105m.g Citrus clementina
Ciclev10033428m.g Citrus clementina
CiPaw.05G083200 Carya illinoinensis
CiPaw.06G071400 Carya illinoinensis
CiPaw.06G121200 Carya illinoinensis
ClCG02G004010 Citrullus lanatus
ClCG05G025360 Citrullus lanatus
COL.COLO4_17355 Corchorus olitorius
COL.COLO4_24178 Corchorus olitorius
Cpa.g.sc20.94 Carica papaya
Cpa.g.sc20.95 Carica papaya
Cpa.g.sc69.52 Carica papaya
CsaV3_5G026500 Cucumis sativus L.
CsaV3_5G031540 Cucumis sativus L.
CSS0000255 Camellia sinensis var. sinensis
CSS0003134 Camellia sinensis var. sinensis
CSS0028972 Camellia sinensis var. sinensis
CSS0039169 Camellia sinensis var. sinensis
CSS0049556 Camellia sinensis var. sinensis
DCAR_004707 Daucus carota
DCAR_004708 Daucus carota
DCAR_007086 Daucus carota
DCAR_026538 Daucus carota
DCAR_030559 Daucus carota
Dinv14116 Davidia involucrata
Dinv24842 Davidia involucrata
Dinv41932 Davidia involucrata
Duzib132G1094 Durio zibethinus
Duzib268G1820 Durio zibethinus
ECA233G1054 Erigeron canadensis
ECA234G0339 Erigeron canadensis
ECA246G1144 Erigeron canadensis
EL10Ac6g13680 Beta vulgaris
EL10Ac9g21368 Beta vulgaris
Eucgr.G01783 Eucalyptus grandis
Eucgr.H02601 Eucalyptus grandis
Eucgr.H02602 Eucalyptus grandis
FAN07G1274 Fragaria x ananassa
FAN12G3943 Fragaria x ananassa
FAN15G2735 Fragaria x ananassa
FAN17G0319 Fragaria x ananassa
FAN20G0314 Fragaria x ananassa
FAN20G1511 Fragaria x ananassa
FAN24G0324 Fragaria x ananassa
FAN27G2066 Fragaria x ananassa
FAN27G2596 Fragaria x ananassa
FvH4_2g15460 Fragaria vesca
FvH4_2g15470 Fragaria vesca
FvH4_4g34320 Fragaria vesca
Glyma.08G286500 Glycine max
Glyma.10G281800 Glycine max
Glyma.18G138751 Glycine max
Glyma.20G107466 Glycine max
Glyma.20G107532 Glycine max
Gohir.A05G314400 Gossypium hirsutum
Gohir.A12G036800 Gossypium hirsutum
Gohir.A12G143000 Gossypium hirsutum
Gohir.D05G313000 Gossypium hirsutum
Gohir.D12G035600 Gossypium hirsutum
Gohir.D12G147800 Gossypium hirsutum
Gorai.008G036900 Gossypium raimondii
Gorai.008G159000 Gossypium raimondii
Gorai.009G337700 Gossypium raimondii
GSVIVG01013720001 Vitis vinifera
GSVIVG01013744001 Vitis vinifera
GSVIVG01013745001 Vitis vinifera
GSVIVG01024008001 Vitis vinifera
HanXRQChr03g0071131 Helianthus annuus
HanXRQChr08g0208701 Helianthus annuus
HanXRQChr17g0539631 Helianthus annuus
Haze_02127 Corylus avellana
Haze_12188 Corylus avellana
Hma1.2p1_0032F.1_g019320 Hydrangea macrophylla
HPP92_012948 Vanilla planifolia
Hund05998 Selenicereus undatus
Lalb_Chr02g0143431 Lupinus albus
Lalb_Chr09g0334991 Lupinus albus
Lj3A1054T81 Lonicera japonica
Lj4g0008008 Lotus japonicus
Lj5g0000172 Lotus japonicus
Lj9A394T44 Lonicera japonica
Lsat_1_v5_gn_3_27360 Lactuca sativa
Lsat_1_v5_gn_4_71800 Lactuca sativa
Lsat_1_v5_gn_8_155680 Lactuca sativa
Manes.04G072000 Manihot esculenta
Manes.12G028000 Manihot esculenta
MBI08_g34004_MAGBIO Magnolia biondii
MD05G1122900 Malus domestica
MD05G1123000 Malus domestica
MD10G1125700 Malus domestica
MD10G1125800 Malus domestica
MD16G1093900 Malus domestica
Medtr1g112680 Medicago truncatula
Medtr8g064700 Medicago truncatula
MELO3C011994.2 Cucumis melo
MELO3C021653.2 Cucumis melo
Migut.B01188 Erythranthe guttata
Migut.D00743 Erythranthe guttata
MSTRG.16976 Avicennia marina
MSTRG.18499 Avicennia marina
Nitab4.5_0000203g0220 Nicotiana tabacum
Nitab4.5_0001483g0050 Nicotiana tabacum
Nitab4.5_0003730g0030 Nicotiana tabacum
Nitab4.5_0024162g0010 Nicotiana tabacum
Nn3g16855 Nelumbo nucifera
Nn3g19711 Nelumbo nucifera
Nn6g34392 Nelumbo nucifera
Oeu015560.1 Olea europaea
Oeu015561.1 Olea europaea
Oeu057821.1 Olea europaea
Os02g0120500 Oryza sativa ssp. japonica
Peaxi162Scf00070g00045 Petunia axillaris
Peaxi162Scf00710g00416 Petunia axillaris
PGR042G3640 Punica granatum
PGR119G0515 Punica granatum
PGR142G0329 Punica granatum
PGSC0003DMG400008195 Solanum tuberosum
Phvul.003G060700 Phaseolus vulgaris
Phvul.007G019000 Phaseolus vulgaris
Potri.008G189600 Populus trichocarpa
Potri.009G136300 Populus trichocarpa
Potri.010G041500 Populus trichocarpa
Pp3c13_14400 Physcomitrium patens
Pp3c13_14420 Physcomitrium patens
Pp3c26_4390 Physcomitrium patens
Pp3c3_15850 Physcomitrium patens
Prupe.1G059900 Prunus persica
Prupe.1G252600 Prunus persica
Prupe.1G578200 Prunus persica
Prupe.6G200700 Prunus persica
Prupe.8G166800 Prunus persica
Prupe.8G166900 Prunus persica
Psat4g124280 Pisum sativum
Psat6g232480 Pisum sativum
PSO017G3589 Papaver somniferum
PSO170G4243 Papaver somniferum
PSO478G0528 Papaver somniferum
PSO478G1064 Papaver somniferum
PSO700G0026 Papaver somniferum
QL03p060111 Quercus lobata
QL06p044803 Quercus lobata
QL11p050977 Quercus lobata
RcHm_v2.0_Chr4g0443741 Rosa chinensis
RcHm_v2.0_Chr6g0278441 Rosa chinensis
RcHm_v2.0_Chr6g0278471 Rosa chinensis
Rhsim05G0054200 Rhododendron simsii
Rhsim05G0054400 Rhododendron simsii
Sabra08G0144000 Salix brachista
Sabra09G0105900 Salix brachista
SalBow6G5782 Salvia bowleyana
Sc11g0001150 Simmondsia chinensis
Sc14g0002300 Simmondsia chinensis
Sed0004702 Sechium edule
Sed0019722 Sechium edule
SEGI_08844 Sequoiadendron giganteum
SGA_v2.0_scaffold124G33644 Striga asiatica
SGA_v2.0_scaffold29G12096 Striga asiatica
SGA_v2.0_scaffold4473G54491 Striga asiatica
SHI05752 Sapria himalayana
SHI17611 Sapria himalayana
SMO266G0108 Selaginella moellendorffii
Solyc05g005300.2 Solanum lycopersicum
Solyc08g062780.2 Solanum lycopersicum
Sopen05g001310 Solanum pennellii
Sopen08g018260 Solanum pennellii
Sp1g09290 Schrenkiella parvula
Sp3g30190 Schrenkiella parvula
TAR381G1205 Trochodendron aralioides
TAR622G1239 Trochodendron aralioides
TAR625G1180 Trochodendron aralioides
TAR628G0026 Trochodendron aralioides
TAR629G2382 Trochodendron aralioides
THA.LOC104804324 Tarenaya hassleriana
THA.LOC104819442 Tarenaya hassleriana
THA.LOC104819650 Tarenaya hassleriana
THA.LOC104819656 Tarenaya hassleriana
Thecc.02G058200 Theobroma cacao
Thecc.02G251300 Theobroma cacao
Thhalv10007639m.g Eutrema salsugineum
Thhalv10022620m.g Eutrema salsugineum
TPR.G11734 Trifolium pratense
TPR.G2429 Trifolium pratense
TPR.G7110 Trifolium pratense
TWI31G0590 Tripterygium wilfordii
TWI75G0278 Tripterygium wilfordii
TWI75G1106 Tripterygium wilfordii
unitig_26.g9753 Utricularia gibba
unitig_26.g9754 Utricularia gibba
unitig_62.g23863 Utricularia gibba
unitig_64.g29773 Utricularia gibba
vmacro16245 Vaccinium macrocarpon
VMungo0251G2485 Vigna mungo
VMungo0720G1541 Vigna mungo
Zm00001eb208200 Zea mays

User provided reference genes

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