Gene: Carub.0003s3072

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0003s3072
  • Transcript Identifier Carub.0003s3072.1
  • Gene Type Coding gene
  • Location scaffold_3 : 13030895-13034011 : positive

Gene Family Information

  • ID HOM05D001601
  • #Genes/#Species 402/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0003s3072.v1.1
  • pacid 39239781
  • synonym Carubv10016240m.g

Descriptions

  • Description PTHR31945//PTHR31945:SF11 - FAMILY NOT NAMED // TRANSCRIPTION FACTOR ABORTED MICROSPORES
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048654
ISO
PLAZA Integrative Orthologyanther morphogenesis Os02g0120500
GO:0048653
ISO
PLAZA Integrative Orthologyanther development Os02g0120500
GO:0048658
ISO
PLAZA Integrative Orthologyanther wall tapetum development AT2G16910
GO:0006355
ISO
PLAZA Integrative Orthologyregulation of transcription, DNA-templated AT2G16910
GO:0009555
ISO
PLAZA Integrative Orthologypollen development AT2G16910
GO:0048657
ISO
PLAZA Integrative Orthologyanther wall tapetum cell differentiation Os02g0120500

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046983
IEA
InterProprotein dimerization activity
GO:0003677
ISO
PLAZA Integrative OrthologyDNA binding Os02g0120500
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G16910
GO:0000978
ISO
PLAZA Integrative OrthologyRNA polymerase II cis-regulatory region sequence-specific DNA binding AT2G16910
GO:0003682
ISO
PLAZA Integrative Orthologychromatin binding AT2G16910

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G16910

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036638 Helix-loop-helix DNA-binding domain superfamily
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
IPR025610 Transcription factor MYC/MYB N-terminal
Mapman id Description
15.5.30 RNA biosynthesis.transcriptional regulation.transcription factor (bHLH)