Gene: AT2G16910

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G16910
  • Transcript Identifier AT2G16910.1
  • Gene Type Coding gene
  • Location Chr2 : 7331721-7334077 : positive

Gene Family Information

  • ID HOM05D001601
  • #Genes/#Species 402/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G16910.1
  • symbol AMS
  • full_name ABORTED MICROSPORES
  • uniprot Q9ZVX2

Descriptions

  • Description basic helix-loop-helix (bHLH) DNA-binding superfamily protein
  • Computational description ABORTED MICROSPORES (AMS); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: tapetal layer development, regulation of transcription, pollen development; LOCATED IN: nucleus; EXPRESSED IN: petal, leaf whorl, sepal, flower, seed; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G26744.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009555
IMP, IGI
Gene Ontologypollen development1 2
GO:0048657
ISO
PLAZA Integrative Orthologyanther wall tapetum cell differentiation Os02g0120500
GO:0048653
ISO
PLAZA Integrative Orthologyanther development Os02g0120500
GO:0048654
ISO
PLAZA Integrative Orthologyanther morphogenesis Os02g0120500
GO:0006355
IBA
TAS
Gene Ontologyregulation of transcription, DNA-templated3 4
GO:0048658
IMP
Gene Ontologyanther wall tapetum development1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046983
IEA
Gene Ontologyprotein dimerization activity
GO:0046983
IEA
InterProprotein dimerization activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0043565
IBA
Gene Ontologysequence-specific DNA binding4
GO:0003700
ISS, IBA
Gene OntologyDNA-binding transcription factor activity3 4
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0003682
IDA
Gene Ontologychromatin binding2
GO:0000978
IDA
Gene OntologyRNA polymerase II cis-regulatory region sequence-specific DNA binding5

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM, IBA
Gene Ontologynucleus4 6

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 Helix-loop-helix DNA-binding domain superfamily
IPR025610 Transcription factor MYC/MYB N-terminal
Mapman id Description
15.5.30 RNA biosynthesis.transcriptional regulation.transcription factor (bHLH)