Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p35700 Brassica napus
A05p30860 Brassica napus
A06p18140 Brassica napus
A06p28280 Brassica napus
Aa31LG4G18080 Aethionema arabicum
Aa31LG8G5580 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.2848 Anthoceros agrestis
Actinidia06659 Actinidia chinensis
Actinidia08723 Actinidia chinensis
Actinidia09823 Actinidia chinensis
Actinidia34290 Actinidia chinensis
Ah.03g146650 Amaranthus hybridus
Ah.13g071080 Amaranthus hybridus
AL3G32120 Arabidopsis lyrata
AL5G29430 Arabidopsis lyrata
Aqoxy5G02112 Aquilegia oxysepala
Aqoxy5G04394 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2055DB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B3C57W Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F551YR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M50AVM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R13DG3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X6LJQK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y5ZQX8 Arachis hypogaea
AT3G18770 Arabidopsis thaliana
AT3G49590 Arabidopsis thaliana
ATR0579G059 Amborella trichopoda
ATR0579G160 Amborella trichopoda
ATR0772G126 Amborella trichopoda
ATR0772G210 Amborella trichopoda
Atru.chr12.2498 Acer truncatum
Atru.chr12.2522 Acer truncatum
Atru.chr4.506 Acer truncatum
AUR62003616 Chenopodium quinoa
AUR62005944 Chenopodium quinoa
AUR62017927 Chenopodium quinoa
AUR62028120 Chenopodium quinoa
BcaB01g00692 Brassica carinata
BcaB02g09595 Brassica carinata
BcaB02g09596 Brassica carinata
BcaB04g20751 Brassica carinata
BcaB06g25927 Brassica carinata
BcaC01g02420 Brassica carinata
BcaC05g28576 Brassica carinata
BcaC07g39423 Brassica carinata
BcaC09g48832 Brassica carinata
BolC1t04511H Brassica oleracea
BolC3t18799H Brassica oleracea
BolC5t33409H Brassica oleracea
BolC8t50075H Brassica oleracea
BraA01t03652Z Brassica rapa
BraA05t21928Z Brassica rapa
BraA06t25771Z Brassica rapa
C01p45450 Brassica napus
C03p65470 Brassica napus
C05p46790 Brassica napus
C08p24590 Brassica napus
CAN.G303.63 Capsicum annuum
CAN.G65.141 Capsicum annuum
CANSAT01G1816 Cannabis sativa
CANSAT21G0260 Cannabis sativa
CARHR094160 Cardamine hirsuta
CARHR158600 Cardamine hirsuta
Carub.0003s1856 Capsella rubella
Carub.0005s1592 Capsella rubella
Ca_05553_v3 Cicer arietinum L.
Ca_16919_v3 Cicer arietinum L.
Ca_17657_v3 Cicer arietinum L.
Ca_29490_v3 Cicer arietinum L.
CBR_g66667 Chara braunii
Cc02_g00570 Coffea canephora
Cc07_g17430 Coffea canephora
CDE02G2410 Ceratophyllum demersum
CDE04G1095 Ceratophyllum demersum
CDE08G1261 Ceratophyllum demersum
Cfa016124 Carpinus fangiana
Ciclev10025105m.g Citrus clementina
CiPaw.03G124700 Carya illinoinensis
CiPaw.05G210100 Carya illinoinensis
CiPaw.06G038000 Carya illinoinensis
ClCG01G015640 Citrullus lanatus
COL.COLO4_14403 Corchorus olitorius
COL.COLO4_22433 Corchorus olitorius
Cpa.g.sc3.190 Carica papaya
Cpa.g.sc42.101 Carica papaya
Cre16.g659000 Chlamydomonas reinhardtii
CsaV3_6G041860 Cucumis sativus L.
CSS0024224 Camellia sinensis var. sinensis
DCAR_020391 Daucus carota
DCAR_031483 Daucus carota
Dinv01960 Davidia involucrata
Dinv05191 Davidia involucrata
Dinv29189 Davidia involucrata
Duzib068G0135 Durio zibethinus
Duzib147G0500 Durio zibethinus
Duzib187G1918 Durio zibethinus
Duzib264G0061 Durio zibethinus
ECA238G1662 Erigeron canadensis
EL10Ac3g05127 Beta vulgaris
EL10Ac6g15264 Beta vulgaris
Eucgr.A00978 Eucalyptus grandis
Eucgr.H04916 Eucalyptus grandis
FAN01G2292 Fragaria x ananassa
FAN03G1563 Fragaria x ananassa
FAN10G1251 Fragaria x ananassa
FAN10G4089 Fragaria x ananassa
FAN19G0028 Fragaria x ananassa
FAN23G0092 Fragaria x ananassa
FAN26G0337 Fragaria x ananassa
FAN28G0705 Fragaria x ananassa
FvH4_1g23440 Fragaria vesca
FvH4_7g33350 Fragaria vesca
FvH4_7g33680 Fragaria vesca
Glyma.02G220700 Glycine max
Glyma.05G189000 Glycine max
Glyma.08G146700 Glycine max
Glyma.14G187000 Glycine max
Gohir.A05G387800 Gossypium hirsutum
Gohir.A05G388000 Gossypium hirsutum
Gohir.A12G001700 Gossypium hirsutum
Gohir.A12G244300 Gossypium hirsutum
Gohir.D04G028700 Gossypium hirsutum
Gohir.D04G030000 Gossypium hirsutum
Gohir.D04G030400 Gossypium hirsutum
Gohir.D05G317600 Gossypium hirsutum
Gohir.D12G001500 Gossypium hirsutum
Gohir.D12G245200 Gossypium hirsutum
Gorai.008G000900 Gossypium raimondii
Gorai.008G262800 Gossypium raimondii
Gorai.012G031400 Gossypium raimondii
Gorai.012G031900 Gossypium raimondii
Gorai.012G032500 Gossypium raimondii
GSVIVG01026577001 Vitis vinifera
GSVIVG01038685001 Vitis vinifera
HanXRQChr01g0010901 Helianthus annuus
HanXRQChr01g0026981 Helianthus annuus
HanXRQChr07g0206591 Helianthus annuus
HanXRQChr14g0445881 Helianthus annuus
HanXRQChr15g0471681 Helianthus annuus
Haze_00338 Corylus avellana
Haze_25175 Corylus avellana
Hma1.2p1_0006F.1_g004810 Hydrangea macrophylla
HPP92_014464 Vanilla planifolia
HPP92_027068 Vanilla planifolia
Hund09757 Selenicereus undatus
Hund28304 Selenicereus undatus
Hund28306 Selenicereus undatus
Lalb_Chr04g0252581 Lupinus albus
Lalb_Chr07g0184561 Lupinus albus
Lalb_Chr10g0102961 Lupinus albus
Lj1g0009287 Lotus japonicus
Lj2C593G6 Lonicera japonica
Lj3C891G15 Lonicera japonica
Lj4A854G12 Lonicera japonica
LjContig00155g0013710 Lotus japonicus
Lsat_1_v5_gn_2_136800 Lactuca sativa
Lsat_1_v5_gn_2_66680 Lactuca sativa
Manes.01G001100 Manihot esculenta
Manes.12G150900 Manihot esculenta
Manes.13G087578 Manihot esculenta
Mapoly0074s0075 Marchantia polymorpha
MBI04_g07087_MAGBIO Magnolia biondii
MBI17_g42919_MAGBIO Magnolia biondii
MCO02G094 Micromonas commoda
MD01G1001900 Malus domestica
MD01G1231700 Malus domestica
MD07G1303800 Malus domestica
Medtr3g095570 Medicago truncatula
Medtr4g045683 Medicago truncatula
Medtr5g068710 Medicago truncatula
Medtr8g093050 Medicago truncatula
MELO3C008035.2 Cucumis melo
Migut.F00118 Erythranthe guttata
Migut.H01098 Erythranthe guttata
MSTRG.2682 Avicennia marina
MSTRG.26950 Avicennia marina
Nitab4.5_0000021g0220 Nicotiana tabacum
Nitab4.5_0000115g0180 Nicotiana tabacum
Nitab4.5_0002691g0050 Nicotiana tabacum
Nitab4.5_0002867g0020 Nicotiana tabacum
Nn1g06114 Nelumbo nucifera
Nn3g18739 Nelumbo nucifera
Nn5g28707 Nelumbo nucifera
Oeu003954.1 Olea europaea
Oeu028496.1 Olea europaea
Oeu037791.1 Olea europaea
Oeu039760.1 Olea europaea
Oeu061047.1 Olea europaea
Oeu064761.1 Olea europaea
Os02g0644500 Oryza sativa ssp. japonica
Os04g0538700 Oryza sativa ssp. japonica
Os11g0162000 Oryza sativa ssp. japonica
Peaxi162Scf00815g00227 Petunia axillaris
Peaxi162Scf01650g00034 Petunia axillaris
PGR042G2858 Punica granatum
PGR102G2863 Punica granatum
PGR119G2105 Punica granatum
PGSC0003DMG400000571 Solanum tuberosum
PGSC0003DMG400026927 Solanum tuberosum
Phvul.002G269600 Phaseolus vulgaris
Phvul.008G187800 Phaseolus vulgaris
Potri.001G309800 Populus trichocarpa
Potri.012G004400 Populus trichocarpa
Potri.019G010700 Populus trichocarpa
Pp3c1_24110 Physcomitrium patens
Pp3c1_24111 Physcomitrium patens
Pp3c2_10630 Physcomitrium patens
Prupe.2G322400 Prunus persica
Prupe.6G164000 Prunus persica
Psat2g061760 Pisum sativum
Psat5g063560 Pisum sativum
Psat5g063600 Pisum sativum
Psat7g047040 Pisum sativum
PSO063G6947 Papaver somniferum
PSO210G0531 Papaver somniferum
PSO238G0008 Papaver somniferum
PSO782G2626 Papaver somniferum
QL06p030463 Quercus lobata
QL09p005936 Quercus lobata
RcHm_v2.0_Chr1g0383331 Rosa chinensis
RcHm_v2.0_Chr2g0118811 Rosa chinensis
Rhsim03G0218600 Rhododendron simsii
Rhsim03G0218700 Rhododendron simsii
Rhsim10G0140700 Rhododendron simsii
Sabra12G0000300 Salix brachista
Sabra15G0000200 Salix brachista
Sabra16G0195600 Salix brachista
Sabra19G0018100 Salix brachista
Sabra19G0024000 Salix brachista
SalBow4G0656 Salvia bowleyana
Sc03g0005130 Simmondsia chinensis
Sc25g0001070 Simmondsia chinensis
Sed0014649 Sechium edule
SEGI_20807 Sequoiadendron giganteum
SGA_v2.0_scaffold137G35127 Striga asiatica
SGA_v2.0_scaffold18G08498 Striga asiatica
SHI11499 Sapria himalayana
SMO361G0124 Selaginella moellendorffii
SMO361G0675 Selaginella moellendorffii
Solyc03g096790.3 Solanum lycopersicum
Solyc06g072980.4 Solanum lycopersicum
Sopen03g027530 Solanum pennellii
Sopen06g029330 Solanum pennellii
Sp3g16840 Schrenkiella parvula
Sp5g12520 Schrenkiella parvula
TAR375G1123 Trochodendron aralioides
TAR376G0313 Trochodendron aralioides
TAR381G0585 Trochodendron aralioides
TAR628G1695 Trochodendron aralioides
THA.LOC104814959 Tarenaya hassleriana
Thecc.01G122600 Theobroma cacao
Thecc.01G122800 Theobroma cacao
Thecc.03G212400 Theobroma cacao
Thhalv10010218m.g Eutrema salsugineum
Thhalv10020300m.g Eutrema salsugineum
TPR.G18734 Trifolium pratense
TPR.G27915 Trifolium pratense
TPR.G37366 Trifolium pratense
TPR.G5797 Trifolium pratense
TWI31G0929 Tripterygium wilfordii
TWI34G0318 Tripterygium wilfordii
TWI63G1113 Tripterygium wilfordii
TWI79G0537 Tripterygium wilfordii
unitig_37.g11999 Utricularia gibba
unitig_899.g14705 Utricularia gibba
unitig_92.g28234 Utricularia gibba
vmacro06478 Vaccinium macrocarpon
vmacro12834 Vaccinium macrocarpon
vmacro18660 Vaccinium macrocarpon
VMungo0251G1614 Vigna mungo
VMungo0647G0763 Vigna mungo
Zm00001eb075390 Zea mays
Zm00001eb092080 Zea mays
Zm00001eb186120 Zea mays
Zm00001eb202370 Zea mays
Zm00001eb248750 Zea mays
Zm00001eb427540 Zea mays

User provided reference genes

Program Settings