Gene: AT3G49590

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G49590
  • Transcript Identifier AT3G49590.1
  • Gene Type Coding gene
  • Location Chr3 : 18377892-18380104 : positive

Gene Family Information

  • ID HOM05D002417
  • #Genes/#Species 280/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G49590.1
  • symbol ATG13
  • full_name autophagy-related 13
  • uniprot Q9SCK0

Descriptions

  • Description Autophagy-related protein 13
  • Computational description Autophagy-related protein 13; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 13 (InterPro:IPR018731); BEST Arabidopsis thaliana protein match is: Autophagy-related protein 13 (TAIR:AT3G18770.1); Has 1957 Blast hits to 674 proteins in 207 species: Archae - 0; Bacteria - 87; Metazoa - 293; Fungi - 173; Plants - 114; Viruses - 5; Other Eukaryotes - 1285 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034727
IBA
GOA Databasepiecemeal microautophagy of the nucleus
GO:0006914
IEA
GOA Databaseautophagy
GO:0006914
IDA
Gene Ontologyautophagy1
GO:0006914
IEA
InterProautophagy
GO:0000045
IEA
Gene Ontologyautophagosome assembly
GO:0000045
IEA
InterProautophagosome assembly
GO:0000423
IBA
GOA Databasemitophagy
GO:0034497
IBA
GOA Databaseprotein localization to phagophore assembly site
GO:0015031
IEA
GOA Databaseprotein transport

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1990316
IBA
GOA DatabaseAtg1/ULK1 kinase complex
GO:1990316
IEA
Gene OntologyAtg1/ULK1 kinase complex
GO:1990316
IEA
InterProAtg1/ULK1 kinase complex
GO:0000407
IBA
GOA Databasephagophore assembly site
GO:0005829
IBA
GOA Databasecytosol
GO:0019898
IBA
GOA Databaseextrinsic component of membrane
GO:0031410
IEA
GOA Databasecytoplasmic vesicle
GO:0005776
IEA
GOA Databaseautophagosome
GO:0005776
IDA
Gene Ontologyautophagosome1
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036570 HORMA domain superfamily
IPR040182 Autophagy-related protein 13
IPR018731 Autophagy-related protein 13, N-terminal
Mapman id Description
19.3.1.2 Protein homeostasis.autophagy.initiation complex.accessory component ATG13