Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p39040 Brassica napus
A05p18210 Brassica napus
A05p34680 Brassica napus
A06p12900 Brassica napus
A07p43830 Brassica napus
Aa31LG10G1710 Aethionema arabicum
Aa31LG4G2390 Aethionema arabicum
Aa31LG7G1840 Aethionema arabicum
Aa31LG8G2000 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2285 Anthoceros agrestis
Actinidia11197 Actinidia chinensis
Actinidia22263 Actinidia chinensis
Actinidia32521 Actinidia chinensis
Actinidia39415 Actinidia chinensis
Ah.04g163970 Amaranthus hybridus
Ah.06g186510 Amaranthus hybridus
AL1G62050 Arabidopsis lyrata
AL2G38970 Arabidopsis lyrata
AL3G27100 Arabidopsis lyrata
Aqoxy1G01885 Aquilegia oxysepala
Aqoxy1G01886 Aquilegia oxysepala
Aqoxy7G03232 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.08TZJZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.79XKZD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A7PA2P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BT3S9N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CEWT6L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NE0GCA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PFN41B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SCJC0Z Arachis hypogaea
AT1G53500 Arabidopsis thaliana
AT1G78570 Arabidopsis thaliana
AT3G14790 Arabidopsis thaliana
ATR0580G148 Amborella trichopoda
Atru.chr2.1961 Acer truncatum
Atru.chr6.1090 Acer truncatum
Atru.chr6.1108 Acer truncatum
Atru.chr7.2662 Acer truncatum
AUR62013952 Chenopodium quinoa
AUR62019659 Chenopodium quinoa
BcaB02g06657 Brassica carinata
BcaB02g10916 Brassica carinata
BcaB06g25356 Brassica carinata
BcaB07g33325 Brassica carinata
BcaC05g25554 Brassica carinata
BcaC05g29036 Brassica carinata
BcaC08g43536 Brassica carinata
BcaC08g44094 Brassica carinata
BcaC08g47432 Brassica carinata
BcaC08g47433 Brassica carinata
BcaC09g48448 Brassica carinata
BolC1t04922H Brassica oleracea
BolC5t30239H Brassica oleracea
BolC5t33931H Brassica oleracea
BolC6t36003H Brassica oleracea
BolC6t36676H Brassica oleracea
BolC6t40266H Brassica oleracea
BraA01t03951Z Brassica rapa
BraA05t20717Z Brassica rapa
BraA05t22284Z Brassica rapa
BraA06t23326Z Brassica rapa
BraA06t24450Z Brassica rapa
BraA07t31891Z Brassica rapa
C01p49660 Brassica napus
C05p15330 Brassica napus
C05p52470 Brassica napus
C06p14990 Brassica napus
C06p52470 Brassica napus
CAN.G375.53 Capsicum annuum
CAN.G480.4 Capsicum annuum
CAN.G904.30 Capsicum annuum
CANSAT56G0890 Cannabis sativa
CANSAT64G1357 Cannabis sativa
CARHR017500 Cardamine hirsuta
CARHR043730 Cardamine hirsuta
CARHR072060 Cardamine hirsuta
CARHR089730 Cardamine hirsuta
Carub.0001s4268 Capsella rubella
Carub.0002s2542 Capsella rubella
Carub.0003s1446 Capsella rubella
Ca_01523_v3 Cicer arietinum L.
Ca_03919_v3 Cicer arietinum L.
Ca_03926_v3 Cicer arietinum L.
Ca_22875_v3 Cicer arietinum L.
CBR_g35045 Chara braunii
CBR_g994 Chara braunii
CBR_g996 Chara braunii
Cc05_g09270 Coffea canephora
Cc05_g10660 Coffea canephora
CDE02G0572 Ceratophyllum demersum
CDE06G0518 Ceratophyllum demersum
Cfa019522 Carpinus fangiana
Cfa022916 Carpinus fangiana
Ciclev10010306m.g Citrus clementina
Ciclev10019182m.g Citrus clementina
Ciclev10030887m.g Citrus clementina
CiPaw.03G189400 Carya illinoinensis
CiPaw.11G156400 Carya illinoinensis
CiPaw.12G111100 Carya illinoinensis
ClCG07G010150 Citrullus lanatus
ClCG08G012600 Citrullus lanatus
COL.COLO4_17466 Corchorus olitorius
COL.COLO4_19018 Corchorus olitorius
COL.COLO4_33728 Corchorus olitorius
Cpa.g.c33489.1 Carica papaya
Cpa.g.sc50.75 Carica papaya
Cre02.g083800 Chlamydomonas reinhardtii
CsaV3_2G031320 Cucumis sativus L.
CsaV3_4G008170 Cucumis sativus L.
CSS0000791 Camellia sinensis var. sinensis
CSS0007309 Camellia sinensis var. sinensis
CSS0008612 Camellia sinensis var. sinensis
CSS0016369 Camellia sinensis var. sinensis
CSS0024174 Camellia sinensis var. sinensis
CSS0037627 Camellia sinensis var. sinensis
DCAR_013782 Daucus carota
Dinv12696 Davidia involucrata
Dinv13359 Davidia involucrata
Dinv26704 Davidia involucrata
Duzib147G0703 Durio zibethinus
Duzib213G0076 Durio zibethinus
Duzib268G0150 Durio zibethinus
ECA233G3247 Erigeron canadensis
ECA236G1076 Erigeron canadensis
ECA240G2561 Erigeron canadensis
EL10Ac3g05468 Beta vulgaris
EL10Ac4g08424 Beta vulgaris
EL10Ac4g08426 Beta vulgaris
Eucgr.F01369 Eucalyptus grandis
Eucgr.F03231 Eucalyptus grandis
Eucgr.K01196 Eucalyptus grandis
FAN02G3972 Fragaria x ananassa
FAN05G3972 Fragaria x ananassa
FAN09G1838 Fragaria x ananassa
FAN11G2275 Fragaria x ananassa
FAN14G0711 Fragaria x ananassa
FAN15G3043 Fragaria x ananassa
FAN16G3609 Fragaria x ananassa
FAN20G1733 Fragaria x ananassa
FAN21G3219 Fragaria x ananassa
FAN25G1070 Fragaria x ananassa
FAN27G1517 Fragaria x ananassa
FvH4_2g36650 Fragaria vesca
FvH4_3g17640 Fragaria vesca
FvH4_6g38000 Fragaria vesca
FvH4_6g38080 Fragaria vesca
Glyma.08G148100 Glycine max
Glyma.08G309766 Glycine max
Glyma.12G234300 Glycine max
Glyma.13G264500 Glycine max
Glyma.14G136400 Glycine max
Glyma.15G210300 Glycine max
Glyma.17G196900 Glycine max
Glyma.18G106300 Glycine max
Gohir.A01G047050 Gossypium hirsutum
Gohir.A01G047100 Gossypium hirsutum
Gohir.A04G044900 Gossypium hirsutum
Gohir.A05G378100 Gossypium hirsutum
Gohir.A08G234100 Gossypium hirsutum
Gohir.A11G289600 Gossypium hirsutum
Gohir.D01G037750 Gossypium hirsutum
Gohir.D01G037800 Gossypium hirsutum
Gohir.D04G037501 Gossypium hirsutum
Gohir.D05G338200 Gossypium hirsutum
Gohir.D11G302800 Gossypium hirsutum
Gorai.002G046100 Gossypium raimondii
Gorai.002G046200 Gossypium raimondii
Gorai.004G271200 Gossypium raimondii
Gorai.007G332000 Gossypium raimondii
Gorai.009G362500 Gossypium raimondii
Gorai.012G042300 Gossypium raimondii
HanXRQChr01g0020021 Helianthus annuus
HanXRQChr03g0072801 Helianthus annuus
HanXRQChr05g0135611 Helianthus annuus
HanXRQChr13g0389751 Helianthus annuus
HanXRQChr15g0495381 Helianthus annuus
Haze_09253 Corylus avellana
Haze_13484 Corylus avellana
Hma1.2p1_0050F.1_g028730 Hydrangea macrophylla
HPP92_002853 Vanilla planifolia
HPP92_009095 Vanilla planifolia
HPP92_024054 Vanilla planifolia
Hund10411 Selenicereus undatus
Hund19139 Selenicereus undatus
Lalb_Chr01g0016291 Lupinus albus
Lalb_Chr03g0031331 Lupinus albus
Lalb_Chr14g0362291 Lupinus albus
Lalb_Chr19g0133701 Lupinus albus
Lalb_Chr25g0285631 Lupinus albus
Lj1A823T38 Lonicera japonica
Lj3g0005710 Lotus japonicus
Lj3g0027605 Lotus japonicus
Lj5g0014803 Lotus japonicus
Lj6g0024117 Lotus japonicus
Lj7C747T6 Lonicera japonica
Lj8C145T9 Lonicera japonica
Lsat_1_v5_gn_6_15640 Lactuca sativa
Lsat_1_v5_gn_7_100160 Lactuca sativa
Lsat_1_v5_gn_7_100181 Lactuca sativa
Lsat_1_v5_gn_9_101680 Lactuca sativa
Manes.03G078900 Manihot esculenta
Manes.15G098900 Manihot esculenta
Manes.16G134400 Manihot esculenta
Mapoly0035s0059 Marchantia polymorpha
MBI06_g20683_MAGBIO Magnolia biondii
MBI07_g30206_MAGBIO Magnolia biondii
MBI14_g08077_MAGBIO Magnolia biondii
MCO09G501 Micromonas commoda
MD03G1250400 Malus domestica
MD09G1154200 Malus domestica
MD09G1154300 Malus domestica
MD09G1154700 Malus domestica
MD11G1270500 Malus domestica
MD15G1106300 Malus domestica
MD17G1140800 Malus domestica
Medtr0034s0060 Medicago truncatula
Medtr1g009600 Medicago truncatula
Medtr2g073240 Medicago truncatula
MELO3C011180.2 Cucumis melo
MELO3C016119.2 Cucumis melo
Migut.H02027 Erythranthe guttata
Migut.M00514 Erythranthe guttata
Migut.M00690 Erythranthe guttata
MSTRG.12857 Avicennia marina
MSTRG.14254 Avicennia marina
MSTRG.14986 Avicennia marina
Nitab4.5_0000347g0010 Nicotiana tabacum
Nitab4.5_0000383g0010 Nicotiana tabacum
Nitab4.5_0000502g0020 Nicotiana tabacum
Nitab4.5_0001140g0170 Nicotiana tabacum
Nitab4.5_0013477g0010 Nicotiana tabacum
Nn3g20968 Nelumbo nucifera
Nn8g40253 Nelumbo nucifera
Oeu006145.1 Olea europaea
Oeu010035.1 Olea europaea
Oeu050681.1 Olea europaea
Oeu058451.1 Olea europaea
Os03g0278200 Oryza sativa ssp. japonica
Peaxi162Scf00111g01320 Petunia axillaris
Peaxi162Scf00213g00710 Petunia axillaris
Peaxi162Scf00692g00113 Petunia axillaris
PGR031G2175 Punica granatum
PGR042G1152 Punica granatum
PGSC0003DMG400007059 Solanum tuberosum
PGSC0003DMG400021254 Solanum tuberosum
PGSC0003DMG400029550 Solanum tuberosum
Phvul.001G060400 Phaseolus vulgaris
Phvul.005G076400 Phaseolus vulgaris
Phvul.006G034000 Phaseolus vulgaris
Potri.001G383500 Populus trichocarpa
Potri.006G272700 Populus trichocarpa
Potri.011G103700 Populus trichocarpa
Pp3c16_7970 Physcomitrium patens
Pp3c25_5230 Physcomitrium patens
Pp3c5_10340 Physcomitrium patens
Pp3c6_15170 Physcomitrium patens
PRCOL_00002895 Prasinoderma coloniale
PRCOL_00005699 Prasinoderma coloniale
Prupe.1G458500 Prunus persica
Prupe.3G170800 Prunus persica
Prupe.4G155800 Prunus persica
Psat1g006880 Pisum sativum
Psat4g176560 Pisum sativum
Psat6g033440 Pisum sativum
PSO017G4973 Papaver somniferum
PSO170G2227 Papaver somniferum
PSO541G6157 Papaver somniferum
PSO675G3453 Papaver somniferum
QL08p024306 Quercus lobata
QL08p043868 Quercus lobata
QL08p043887 Quercus lobata
QL12p025527 Quercus lobata
RcHm_v2.0_Chr2g0151131 Rosa chinensis
RcHm_v2.0_Chr5g0029371 Rosa chinensis
RcHm_v2.0_Chr6g0305141 Rosa chinensis
Rhsim01G0183500 Rhododendron simsii
Rhsim06G0119000 Rhododendron simsii
Rhsim06G0212400 Rhododendron simsii
RhsimUnG0206500 Rhododendron simsii
Sabra06G0211100 Salix brachista
Sabra11G0077100 Salix brachista
Sabra11G0081900 Salix brachista
Sabra16G0252600 Salix brachista
SalBow7G3346 Salvia bowleyana
SalBow8G1354 Salvia bowleyana
SalBow8G2681 Salvia bowleyana
Sc03g0010730 Simmondsia chinensis
Sc16g0005520 Simmondsia chinensis
Sc16g0007770 Simmondsia chinensis
Sed0005479 Sechium edule
Sed0011910 Sechium edule
Sed0015525 Sechium edule
SEGI_10614 Sequoiadendron giganteum
SEGI_36147 Sequoiadendron giganteum
SGA_v2.0_scaffold130G34358 Striga asiatica
SGA_v2.0_scaffold181G39768 Striga asiatica
SGA_v2.0_scaffold4G02150 Striga asiatica
SGA_v2.0_scaffold73G24381 Striga asiatica
SMO356G0589 Selaginella moellendorffii
Solyc07g062130.3 Solanum lycopersicum
Solyc08g069110.3 Solanum lycopersicum
Solyc10g007480.4 Solanum lycopersicum
Sopen07g030400 Solanum pennellii
Sopen08g022760 Solanum pennellii
Sopen10g003420 Solanum pennellii
Sp1g15120 Schrenkiella parvula
Sp1g40030 Schrenkiella parvula
Sp3g13010 Schrenkiella parvula
Sp5g33660 Schrenkiella parvula
TAR383G1059 Trochodendron aralioides
TAR626G1019 Trochodendron aralioides
TAR626G1433 Trochodendron aralioides
TAR627G0412 Trochodendron aralioides
THA.LOC104810424 Tarenaya hassleriana
THA.LOC104812303 Tarenaya hassleriana
THA.LOC104822576 Tarenaya hassleriana
Thecc.01G160500 Theobroma cacao
Thecc.07G134400 Theobroma cacao
Thecc.09G008700 Theobroma cacao
Thhalv10011290m.g Eutrema salsugineum
Thhalv10018232m.g Eutrema salsugineum
Thhalv10020227m.g Eutrema salsugineum
TPR.G11984 Trifolium pratense
TPR.G16465 Trifolium pratense
TPR.G16785 Trifolium pratense
TPR.G21364 Trifolium pratense
TPR.G34997 Trifolium pratense
TWI32G1127 Tripterygium wilfordii
TWI38G1922 Tripterygium wilfordii
TWI39G0085 Tripterygium wilfordii
TWI63G0218 Tripterygium wilfordii
unitig_21.g20060 Utricularia gibba
unitig_699.g19238 Utricularia gibba
unitig_85.g27386 Utricularia gibba
vmacro09416 Vaccinium macrocarpon
vmacro11975 Vaccinium macrocarpon
vmacro12449 Vaccinium macrocarpon
VMungo0540G1115 Vigna mungo
VMungo0647G0440 Vigna mungo
VMungo1080G0370 Vigna mungo
Zm00001eb012590 Zea mays
Zm00001eb043460 Zea mays
Zm00001eb155810 Zea mays
Zm00001eb209990 Zea mays
Zm00001eb284390 Zea mays
Zm00001eb397570 Zea mays

User provided reference genes

Program Settings