Gene: Solyc10g007480.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc10g007480.4
  • Transcript Identifier Solyc10g007480.4.1
  • Gene Type Coding gene
  • Location SL4.0ch10 : 1704755-1706862 : negative

Gene Family Information

  • ID HOM05D001036
  • #Genes/#Species 585/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc10g007480.4.1
  • uniprot A0A3Q7IBT3
  • gene_id Solyc10g007480

Descriptions

  • Description trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 (AHRD V3.3 *** A0A2I4GY66_9ROSI)
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010214
ISO
PLAZA Integrative Orthologyseed coat development AT1G53500
GO:0010192
ISO
PLAZA Integrative Orthologymucilage biosynthetic process AT1G53500
GO:0010315
IBA
GOA Databaseauxin efflux
GO:0010253
IBA
GOA DatabaseUDP-rhamnose biosynthetic process
GO:0051555
IBA
GOA Databaseflavonol biosynthetic process
GO:0009225
IEA
GOA Databasenucleotide-sugar metabolic process
GO:0009225
IEA
InterPronucleotide-sugar metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0050377
IBA
GOA DatabaseUDP-glucose 4,6-dehydratase activity
GO:0010489
ISO
PLAZA Integrative OrthologyUDP-4-keto-6-deoxy-glucose-3,5-epimerase activity AT1G53500
GO:0010490
ISO
PLAZA Integrative OrthologyUDP-4-keto-rhamnose-4-keto-reductase activity AT1G53500
GO:0008460
IEA
GOA DatabasedTDP-glucose 4,6-dehydratase activity
GO:0008460
IEA
InterProdTDP-glucose 4,6-dehydratase activity
GO:0010280
IBA
GOA DatabaseUDP-L-rhamnose synthase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G14790
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT3G14790
GO:0016020
IEA
GOA Databasemembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005888 dTDP-glucose 4,6-dehydratase
IPR029903 RmlD-like substrate binding domain
IPR036291 NAD(P)-binding domain superfamily
IPR016040 NAD(P)-binding domain
Mapman id Description
3.13.6.1 Carbohydrate metabolism.nucleotide sugar biosynthesis.nucleotide rhamnose biosynthesis.UDP-L-rhamnose synthase (RHM)