Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p00890 Brassica napus
A03p37480 Brassica napus
A05p37140 Brassica napus
A06p39420 Brassica napus
A09p08970 Brassica napus
A10p27250 Brassica napus
Aa31LG11G7570 Aethionema arabicum
Aa31LG1G16690 Aethionema arabicum
Aa31LG3G6390 Aethionema arabicum
Aa31LG6G15250 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.2055 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.2255 Anthoceros agrestis
Actinidia09374 Actinidia chinensis
Actinidia09376 Actinidia chinensis
Actinidia19998 Actinidia chinensis
Actinidia20297 Actinidia chinensis
Actinidia31684 Actinidia chinensis
Ah.10g038690 Amaranthus hybridus
AL3G23840 Arabidopsis lyrata
AL6G20850 Arabidopsis lyrata
AL7G12300 Arabidopsis lyrata
AL8G20250 Arabidopsis lyrata
AL8G42830 Arabidopsis lyrata
Aqoxy1G00202 Aquilegia oxysepala
Aqoxy6G00735 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.65TLFW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6Y6HV0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q3ZPYL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SBY01L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UY4KU0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VDBV8A Arachis hypogaea
AT3G12160 Arabidopsis thaliana
AT4G39990 Arabidopsis thaliana
AT5G47960 Arabidopsis thaliana
AT5G65270 Arabidopsis thaliana
ATR0605G242 Amborella trichopoda
ATR0684G134 Amborella trichopoda
Atru.chr1.938 Acer truncatum
Atru.chr11.2635 Acer truncatum
Atru.chr3.1362 Acer truncatum
AUR62003251 Chenopodium quinoa
AUR62024364 Chenopodium quinoa
AUR62025962 Chenopodium quinoa
AUR62027219 Chenopodium quinoa
BcaB04g18693 Brassica carinata
BcaB04g20008 Brassica carinata
BcaB04g21092 Brassica carinata
BcaB08g37115 Brassica carinata
BcaC01g04061 Brassica carinata
BcaC04g19311 Brassica carinata
BcaC05g29276 Brassica carinata
BcaC06g30831 Brassica carinata
BcaC06g30832 Brassica carinata
BcaC09g48221 Brassica carinata
BcaNung00923 Brassica carinata
BcaNung00926 Brassica carinata
BcaNung05192 Brassica carinata
BolC1t00099H Brassica oleracea
BolC1t00100H Brassica oleracea
BolC1t05259H Brassica oleracea
BolC3t16820H Brassica oleracea
BolC5t34226H Brassica oleracea
BolC7t44404H Brassica oleracea
BolC9t53944H Brassica oleracea
BolC9t59479H Brassica oleracea
BraA01t00088Z Brassica rapa
BraA03t12907Z Brassica rapa
BraA05t22512Z Brassica rapa
BraA06t26857Z Brassica rapa
BraA09t36548Z Brassica rapa
BraA10t44775Z Brassica rapa
C01p01020 Brassica napus
C01p01040 Brassica napus
C01p53130 Brassica napus
C03p45480 Brassica napus
C05p55570 Brassica napus
C07p38850 Brassica napus
C09p10420 Brassica napus
C09p67060 Brassica napus
CAN.G1161.8 Capsicum annuum
CAN.G170.133 Capsicum annuum
CAN.G787.13 Capsicum annuum
CAN.G905.29 Capsicum annuum
CANSAT01G0543 Cannabis sativa
CANSAT01G2895 Cannabis sativa
CANSAT80G1327 Cannabis sativa
CANSAT80G2306 Cannabis sativa
CARHR086740 Cardamine hirsuta
CARHR184300 Cardamine hirsuta
CARHR246690 Cardamine hirsuta
CARHR279220 Cardamine hirsuta
Carub.0003s1153 Capsella rubella
Carub.0006s0882 Capsella rubella
Carub.0007s0195 Capsella rubella
Carub.0008s0752 Capsella rubella
Carub.0008s2614 Capsella rubella
Ca_08865_v3 Cicer arietinum L.
Ca_12110_v3 Cicer arietinum L.
Ca_16515_v3 Cicer arietinum L.
Ca_17756_v3 Cicer arietinum L.
Cc02_g27510 Coffea canephora
Cc06_g16380 Coffea canephora
Cc07_g14760 Coffea canephora
CDE03G0489 Ceratophyllum demersum
CDE04G1290 Ceratophyllum demersum
CDE05G0482 Ceratophyllum demersum
CDE05G1896 Ceratophyllum demersum
CDE05G2301 Ceratophyllum demersum
CDE06G2747 Ceratophyllum demersum
CDE10G0957 Ceratophyllum demersum
CDE10G1240 Ceratophyllum demersum
Cfa002618 Carpinus fangiana
Cfa010733 Carpinus fangiana
Cfa010735 Carpinus fangiana
Cfa016884 Carpinus fangiana
Cfa021988 Carpinus fangiana
Ciclev10005824m.g Citrus clementina
Ciclev10026427m.g Citrus clementina
Ciclev10032676m.g Citrus clementina
CiPaw.03G144700 Carya illinoinensis
CiPaw.04G102900 Carya illinoinensis
CiPaw.05G033100 Carya illinoinensis
CiPaw.13G002600 Carya illinoinensis
ClCG01G018620 Citrullus lanatus
ClCG04G000360 Citrullus lanatus
ClCG10G012520 Citrullus lanatus
COL.COLO4_23902 Corchorus olitorius
COL.COLO4_27281 Corchorus olitorius
COL.COLO4_28741 Corchorus olitorius
Cpa.g.sc245.1 Carica papaya
Cpa.g.sc55.84 Carica papaya
Cpa.g.sc85.114 Carica papaya
CsaV3_3G032290 Cucumis sativus L.
CsaV3_4G010530 Cucumis sativus L.
CsaV3_6G045290 Cucumis sativus L.
CSS0026105 Camellia sinensis var. sinensis
CSS0035794 Camellia sinensis var. sinensis
CSS0041081 Camellia sinensis var. sinensis
CSS0045841 Camellia sinensis var. sinensis
DCAR_002240 Daucus carota
DCAR_003478 Daucus carota
DCAR_010564 Daucus carota
DCAR_013565 Daucus carota
DCAR_014208 Daucus carota
DCAR_014998 Daucus carota
DCAR_030840 Daucus carota
Dinv08848 Davidia involucrata
Dinv13220 Davidia involucrata
Dinv43465 Davidia involucrata
Duzib049G0001 Durio zibethinus
Duzib093G1930 Durio zibethinus
Duzib106G0928 Durio zibethinus
Duzib128G0224 Durio zibethinus
Duzib138G1541 Durio zibethinus
Duzib147G0506 Durio zibethinus
Duzib187G1777 Durio zibethinus
Duzib264G0908 Durio zibethinus
ECA248G1853 Erigeron canadensis
EL10Ac2g04306 Beta vulgaris
EL10Ac3g06977 Beta vulgaris
EL10Ac6g14825 Beta vulgaris
Eucgr.A02418 Eucalyptus grandis
Eucgr.G03398 Eucalyptus grandis
Eucgr.I00531 Eucalyptus grandis
FAN01G1189 Fragaria x ananassa
FAN01G1807 Fragaria x ananassa
FAN03G2214 Fragaria x ananassa
FAN06G2331 Fragaria x ananassa
FAN10G1088 Fragaria x ananassa
FAN14G2762 Fragaria x ananassa
FAN19G3042 Fragaria x ananassa
FAN23G0758 Fragaria x ananassa
FAN26G1715 Fragaria x ananassa
FAN28G0985 Fragaria x ananassa
FvH4_1g20380 Fragaria vesca
FvH4_6g22850 Fragaria vesca
FvH4_7g00660 Fragaria vesca
Glyma.01G080300 Glycine max
Glyma.02G176000 Glycine max
Glyma.05G176300 Glycine max
Glyma.08G133800 Glycine max
Glyma.10G092700 Glycine max
Glyma.11G167591 Glycine max
Glyma.11G241300 Glycine max
Glyma.18G015700 Glycine max
Gohir.A01G137682 Gossypium hirsutum
Gohir.A02G129000 Gossypium hirsutum
Gohir.A08G145900 Gossypium hirsutum
Gohir.A09G125600 Gossypium hirsutum
Gohir.A11G051300 Gossypium hirsutum
Gohir.A11G205700 Gossypium hirsutum
Gohir.D01G126500 Gossypium hirsutum
Gohir.D03G039800 Gossypium hirsutum
Gohir.D08G166800 Gossypium hirsutum
Gohir.D09G122500 Gossypium hirsutum
Gohir.D11G054700 Gossypium hirsutum
Gohir.D11G219500 Gossypium hirsutum
Gorai.002G157000 Gossypium raimondii
Gorai.003G040900 Gossypium raimondii
Gorai.004G174200 Gossypium raimondii
Gorai.006G140300 Gossypium raimondii
Gorai.007G060000 Gossypium raimondii
Gorai.007G234300 Gossypium raimondii
GSVIVG01003415001 Vitis vinifera
GSVIVG01032054001 Vitis vinifera
GSVIVG01033357001 Vitis vinifera
HanXRQChr01g0017361 Helianthus annuus
HanXRQChr10g0293681 Helianthus annuus
HanXRQChr14g0445441 Helianthus annuus
HanXRQChr15g0491281 Helianthus annuus
HanXRQChr16g0499551 Helianthus annuus
Haze_19932 Corylus avellana
Haze_27760 Corylus avellana
Hma1.2p1_0019F.1_g013685 Hydrangea macrophylla
Hma1.2p1_0640F.1_g194080 Hydrangea macrophylla
Hma1.2p1_0929F.1_g237900 Hydrangea macrophylla
HPP92_017838 Vanilla planifolia
HPP92_019684 Vanilla planifolia
HPP92_027243 Vanilla planifolia
Hund14108 Selenicereus undatus
Hund16562 Selenicereus undatus
Hund19179 Selenicereus undatus
Hund24761 Selenicereus undatus
Lalb_Chr04g0259661 Lupinus albus
Lalb_Chr07g0185291 Lupinus albus
Lalb_Chr12g0203951 Lupinus albus
Lalb_Chr15g0078841 Lupinus albus
Lalb_Chr18g0047581 Lupinus albus
Lalb_Chr18g0047591 Lupinus albus
Lj1g0026520 Lotus japonicus
Lj2A373G38 Lonicera japonica
Lj2C541G13 Lonicera japonica
Lj4A898G54 Lonicera japonica
Lj4g0023566 Lotus japonicus
Lj5g0002372 Lotus japonicus
Lj7A568G79 Lonicera japonica
Lj9A629G99 Lonicera japonica
Lsat_1_v5_gn_1_109460 Lactuca sativa
Lsat_1_v5_gn_2_66201 Lactuca sativa
Lsat_1_v5_gn_9_28281 Lactuca sativa
Manes.07G003700 Manihot esculenta
Manes.08G047100 Manihot esculenta
Manes.09G031100 Manihot esculenta
Manes.10G146500 Manihot esculenta
Manes.12G131100 Manihot esculenta
Manes.13G095900 Manihot esculenta
Mapoly0050s0009 Marchantia polymorpha
MBI01_g36436_MAGBIO Magnolia biondii
MBI02_g27967_MAGBIO Magnolia biondii
MBI07_g19431_MAGBIO Magnolia biondii
MD01G1034200 Malus domestica
MD02G1315800 Malus domestica
MD07G1006300 Malus domestica
MD12G1062500 Malus domestica
MD14G1063200 Malus domestica
MD15G1321700 Malus domestica
Medtr0262s0050 Medicago truncatula
Medtr1g052475 Medicago truncatula
Medtr3g086980 Medicago truncatula
Medtr8g089985 Medicago truncatula
MELO3C007742.2 Cucumis melo
MELO3C023181.2 Cucumis melo
MELO3C023961.2 Cucumis melo
Migut.B01334 Erythranthe guttata
Migut.H02343 Erythranthe guttata
Migut.J01802 Erythranthe guttata
Migut.K00059 Erythranthe guttata
MSTRG.15720 Avicennia marina
MSTRG.17054 Avicennia marina
MSTRG.23358 Avicennia marina
MSTRG.2577 Avicennia marina
Nitab4.5_0000016g0040 Nicotiana tabacum
Nitab4.5_0000241g0230 Nicotiana tabacum
Nitab4.5_0000991g0080 Nicotiana tabacum
Nitab4.5_0001542g0070 Nicotiana tabacum
Nitab4.5_0002334g0080 Nicotiana tabacum
Nitab4.5_0002604g0020 Nicotiana tabacum
Nitab4.5_0002934g0010 Nicotiana tabacum
Nitab4.5_0005456g0010 Nicotiana tabacum
Nitab4.5_0006768g0040 Nicotiana tabacum
Nitab4.5_0008895g0010 Nicotiana tabacum
Nn1g05427 Nelumbo nucifera
Nn1g08085 Nelumbo nucifera
Nn2g15510 Nelumbo nucifera
Nn5g30028 Nelumbo nucifera
Nn7g36095 Nelumbo nucifera
Oeu017514.1 Olea europaea
Oeu033177.1 Olea europaea
Oeu039114.1 Olea europaea
Oeu056634.1 Olea europaea
Oeu059758.2 Olea europaea
Oeu064268.1 Olea europaea
Os09g0281700 Oryza sativa ssp. japonica
Peaxi162Scf00003g00424 Petunia axillaris
Peaxi162Scf00285g00312 Petunia axillaris
Peaxi162Scf00381g00610 Petunia axillaris
Peaxi162Scf00428g01027 Petunia axillaris
Peaxi162Scf00569g00528 Petunia axillaris
PGR004G0435 Punica granatum
PGR004G1053 Punica granatum
PGR031G1256 Punica granatum
PGR102G0139 Punica granatum
PGSC0003DMG400008154 Solanum tuberosum
PGSC0003DMG400010888 Solanum tuberosum
PGSC0003DMG400012930 Solanum tuberosum
PGSC0003DMG400016224 Solanum tuberosum
PGSC0003DMG400023588 Solanum tuberosum
PGSC0003DMG400025262 Solanum tuberosum
PGSC0003DMG400039432 Solanum tuberosum
PGSC0003DMG400046385 Solanum tuberosum
Phvul.001G253300 Phaseolus vulgaris
Phvul.002G261400 Phaseolus vulgaris
Phvul.007G257200 Phaseolus vulgaris
Phvul.008G143600 Phaseolus vulgaris
Potri.001G270100 Populus trichocarpa
Potri.005G073000 Populus trichocarpa
Potri.006G057700 Populus trichocarpa
Potri.007G096000 Populus trichocarpa
Potri.016G050400 Populus trichocarpa
Pp3c20_15610 Physcomitrium patens
Pp3c23_7840 Physcomitrium patens
Pp3c24_9710 Physcomitrium patens
Prupe.2G009000 Prunus persica
Prupe.6G191600 Prunus persica
Prupe.7G071600 Prunus persica
Psat3g160000 Pisum sativum
Psat5g090680 Pisum sativum
Psat6g101440 Pisum sativum
Psat7g057080 Pisum sativum
PSO339G4485 Papaver somniferum
PSO384G2098 Papaver somniferum
PSO541G0824 Papaver somniferum
PSO781G0250 Papaver somniferum
QL04p005165 Quercus lobata
QL06p048317 Quercus lobata
QL07p022420 Quercus lobata
QL07p022428 Quercus lobata
RcHm_v2.0_Chr1g0314881 Rosa chinensis
RcHm_v2.0_Chr2g0112511 Rosa chinensis
RcHm_v2.0_Chr3g0480591 Rosa chinensis
RcHm_v2.0_Chr3g0480611 Rosa chinensis
Rhsim01G0131100 Rhododendron simsii
Rhsim04G0098800 Rhododendron simsii
Rhsim10G0166800 Rhododendron simsii
Sabra07G0079100 Salix brachista
Sabra16G0165500 Salix brachista
SalBow1G3684 Salvia bowleyana
SalBow1G3717 Salvia bowleyana
SalBow5G4735 Salvia bowleyana
SalBow5G5414 Salvia bowleyana
Sc03g0000090 Simmondsia chinensis
Sc11g0009310 Simmondsia chinensis
Sc13g0002080 Simmondsia chinensis
Sc25g0005170 Simmondsia chinensis
Sed0012606 Sechium edule
Sed0016047 Sechium edule
Sed0020166 Sechium edule
Sed0021422 Sechium edule
Sed0026060 Sechium edule
Sed0027141 Sechium edule
SEGI_02102 Sequoiadendron giganteum
SEGI_10461 Sequoiadendron giganteum
SEGI_27576 Sequoiadendron giganteum
SEGI_36672 Sequoiadendron giganteum
SGA_v2.0_scaffold105G30469 Striga asiatica
SGA_v2.0_scaffold108G30885 Striga asiatica
SGA_v2.0_scaffold195G40797 Striga asiatica
SGA_v2.0_scaffold260G45858 Striga asiatica
SGA_v2.0_scaffold335G49104 Striga asiatica
SGA_v2.0_scaffold69G23081 Striga asiatica
SMO134G0245 Selaginella moellendorffii
SMO143G0236 Selaginella moellendorffii
Solyc01g086850.3 Solanum lycopersicum
Solyc03g064020.3 Solanum lycopersicum
Solyc04g012180.4 Solanum lycopersicum
Solyc10g079030.2 Solanum lycopersicum
Solyc11g010100.2 Solanum lycopersicum
Sopen01g033860 Solanum pennellii
Sopen03g017670 Solanum pennellii
Sopen04g006290 Solanum pennellii
Sopen10g029650 Solanum pennellii
Sopen10g029670 Solanum pennellii
Sopen11g004900 Solanum pennellii
Sp2g18460 Schrenkiella parvula
Sp2g28370 Schrenkiella parvula
Sp3g10400 Schrenkiella parvula
Sp4g01420 Schrenkiella parvula
Sp6g33100 Schrenkiella parvula
Sp7g35880 Schrenkiella parvula
TAR362G0518 Trochodendron aralioides
TAR369G0624 Trochodendron aralioides
TAR376G0398 Trochodendron aralioides
TAR381G1339 Trochodendron aralioides
TAR623G1512 Trochodendron aralioides
TAR628G0817 Trochodendron aralioides
THA.LOC104798856 Tarenaya hassleriana
THA.LOC104799312 Tarenaya hassleriana
THA.LOC104801674 Tarenaya hassleriana
THA.LOC104809873 Tarenaya hassleriana
THA.LOC104824883 Tarenaya hassleriana
THA.LOC104826762 Tarenaya hassleriana
Thecc.01G097000 Theobroma cacao
Thecc.01G414300 Theobroma cacao
Thecc.05G166200 Theobroma cacao
Thhalv10000314m.g Eutrema salsugineum
Thhalv10000315m.g Eutrema salsugineum
Thhalv10004873m.g Eutrema salsugineum
Thhalv10004881m.g Eutrema salsugineum
Thhalv10014596m.g Eutrema salsugineum
Thhalv10022384m.g Eutrema salsugineum
TPR.G16009 Trifolium pratense
TPR.G25645 Trifolium pratense
TPR.G39040 Trifolium pratense
TPR.G39054 Trifolium pratense
TPR.G6265 Trifolium pratense
TWI09G0714 Tripterygium wilfordii
TWI53G0642 Tripterygium wilfordii
TWI74G1011 Tripterygium wilfordii
TWI77G0267 Tripterygium wilfordii
unitig_0.g1378 Utricularia gibba
unitig_736.g22295 Utricularia gibba
unitig_736.g22577 Utricularia gibba
unitig_899.g14552 Utricularia gibba
unitig_899.g15082 Utricularia gibba
vmacro09099 Vaccinium macrocarpon
vmacro12975 Vaccinium macrocarpon
vmacro21171 Vaccinium macrocarpon
VMungo0251G0258 Vigna mungo
VMungo0720G1825 Vigna mungo
VMungo1383G2353 Vigna mungo
VMungo1383G2646 Vigna mungo
Zm00001eb006850 Zea mays
Zm00001eb097330 Zea mays
Zm00001eb223850 Zea mays
Zm00001eb401400 Zea mays

User provided reference genes

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