Gene: AT3G12160

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G12160
  • Transcript Identifier AT3G12160.1
  • Gene Type Coding gene
  • Location Chr3 : 3879495-3880437 : negative

Gene Family Information

  • ID HOM05D000064
  • #Genes/#Species 3993/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G12160.1
  • symbol RABA4D
  • Alias ATRABA4D,ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D
  • uniprot Q9LH50

Descriptions

  • Description RAB GTPase homolog A4D
  • Computational description RAB GTPase homolog A4D (RABA4D); FUNCTIONS IN: GTP binding; INVOLVED IN: regulation of pollen tube growth, pollen tube growth, pollen tube development; LOCATED IN: exocytic vesicle, apical part of cell; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A4C (TAIR:AT5G47960.1); Has 28921 Blast hits to 28882 proteins in 778 species: Archae - 24; Bacteria - 155; Metazoa - 15072; Fungi - 4263; Plants - 3370; Viruses - 20; Other Eukaryotes - 6017 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0015031
IEA
GOA Databaseprotein transport
GO:0080092
IMP
Gene Ontologyregulation of pollen tube growth1
GO:0048868
IGI
Gene Ontologypollen tube development2
GO:0009860
IDA
Gene Ontologypollen tube growth3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005525
IEA
GOA DatabaseGTP binding
GO:0005525
IEA
InterProGTP binding
GO:0003924
IEA
Gene OntologyGTPase activity
GO:0003924
IEA
InterProGTPase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0019900
IPI
Gene Ontologykinase binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005768
IBA
Gene Ontologyendosome4
GO:0016020
IEA
GOA Databasemembrane
GO:0031410
IEA
GOA Databasecytoplasmic vesicle
GO:0030659
IEA
GOA Databasecytoplasmic vesicle membrane
GO:0005794
IBA
Gene OntologyGolgi apparatus4
GO:0005829
HDA
Gene Ontologycytosol5
GO:0090404
IDA
Gene Ontologypollen tube tip1
GO:0070382
IDA
Gene Ontologyexocytic vesicle3
GO:0045177
IDA
Gene Ontologyapical part of cell3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR001806 Small GTPase
IPR005225 Small GTP-binding protein domain
Mapman id Description
22.3.4.1.1 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB-GTPase activities.A-class RAB GTPase