Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A10p30780 Brassica napus
Aa31LG11G6560 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1674 Anthoceros agrestis
Actinidia00665 Actinidia chinensis
Actinidia00966 Actinidia chinensis
Ah.16g103820 Amaranthus hybridus
Ah.16g108070 Amaranthus hybridus
AL6G15380 Arabidopsis lyrata
Aqoxy1G01634 Aquilegia oxysepala
Aqoxy5G04144 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.SVWC8K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U87T4F Arachis hypogaea
AT5G05490 Arabidopsis thaliana
ATR0174G036 Amborella trichopoda
Atru.chr12.77 Acer truncatum
AUR62012290 Chenopodium quinoa
AUR62022930 Chenopodium quinoa
BcaC06g32260 Brassica carinata
BolC9t59888H Brassica oleracea
BraA10t45119Z Brassica rapa
C09p71270 Brassica napus
CAN.G1001.50 Capsicum annuum
CAN.G1432.18 Capsicum annuum
CANSAT32G0002 Cannabis sativa
CANSAT56G0816 Cannabis sativa
CARHR207780 Cardamine hirsuta
CARHR290790 Cardamine hirsuta
Carub.0006s0439 Capsella rubella
Ca_05983_v3 Cicer arietinum L.
Ca_05985_v3 Cicer arietinum L.
CBR_g34518 Chara braunii
Cc02_g05730 Coffea canephora
CDE02G3956 Ceratophyllum demersum
CDE09G0264 Ceratophyllum demersum
Cfa001286 Carpinus fangiana
Ciclev10031002m.g Citrus clementina
CiPaw.01G301000 Carya illinoinensis
ClCG07G004460 Citrullus lanatus
Cpa.g.sc19.141 Carica papaya
Cre12.g554650 Chlamydomonas reinhardtii
CsaV3_5G010370 Cucumis sativus L.
CSS0008249 Camellia sinensis var. sinensis
CSS0049037 Camellia sinensis var. sinensis
DCAR_011837 Daucus carota
Dinv21763 Davidia involucrata
Duzib128G0112 Durio zibethinus
ECA234G2111 Erigeron canadensis
EL10Ac2g04883 Beta vulgaris
EL10Ac8g19299 Beta vulgaris
EL10Ac8g19300 Beta vulgaris
Eucgr.G03083 Eucalyptus grandis
FAN04G1688 Fragaria x ananassa
FAN08G0290 Fragaria x ananassa
FAN13G2483 Fragaria x ananassa
FAN18G0869 Fragaria x ananassa
FAN18G1063 Fragaria x ananassa
FAN18G1445 Fragaria x ananassa
FvH4_5g27761 Fragaria vesca
FvH4_5g31060 Fragaria vesca
FvH4_5g35270 Fragaria vesca
Glyma.02G263700 Glycine max
Glyma.14G057200 Glycine max
Gohir.A05G331501 Gossypium hirsutum
Gohir.D04G070101 Gossypium hirsutum
Gorai.012G078600 Gossypium raimondii
GSVIVG01032766001 Vitis vinifera
HanXRQChr08g0221791 Helianthus annuus
HanXRQChr08g0221801 Helianthus annuus
Hma1.2p1_3100F.1_g332690 Hydrangea macrophylla
HPP92_003692 Vanilla planifolia
Lalb_Chr10g0105231 Lupinus albus
Lalb_Chr10g0105241 Lupinus albus
Lj4g0013997 Lotus japonicus
LjContig00357g0010590 Lotus japonicus
Manes.10G009400 Manihot esculenta
Mapoly0041s0038 Marchantia polymorpha
MBI03_g10782_MAGBIO Magnolia biondii
MD04G1165800 Malus domestica
MD12G1179600 Malus domestica
Medtr5g081260 Medicago truncatula
Medtr5g081270 Medicago truncatula
Medtr5g083120 Medicago truncatula
MELO3C018373.2 Cucumis melo
Migut.F00644 Erythranthe guttata
MSTRG.8933 Avicennia marina
Nitab4.5_0001163g0110 Nicotiana tabacum
Nitab4.5_0012306g0020 Nicotiana tabacum
Nn2g10959 Nelumbo nucifera
Oeu041939.1 Olea europaea
Os05g0580500 Oryza sativa ssp. japonica
Peaxi162Scf00114g01013 Petunia axillaris
Peaxi162Scf00114g01014 Petunia axillaris
PGR142G2246 Punica granatum
Phvul.001G192700 Phaseolus vulgaris
Phvul.007G217900 Phaseolus vulgaris
Phvul.008G221700 Phaseolus vulgaris
Potri.008G072300 Populus trichocarpa
Pp3c3_26738 Physcomitrium patens
Prupe.2G254800 Prunus persica
Psat2g030120 Pisum sativum
PSO017G2966 Papaver somniferum
PSO017G6293 Papaver somniferum
PSO063G7659 Papaver somniferum
PSO170G1093 Papaver somniferum
PSO170G5836 Papaver somniferum
QL08p063631 Quercus lobata
RcHm_v2.0_Chr0c11g0499361 Rosa chinensis
RcHm_v2.0_Chr0c11g0499371 Rosa chinensis
RcHm_v2.0_Chr0c11g0499561 Rosa chinensis
RcHm_v2.0_Chr0c11g0499571 Rosa chinensis
RcHm_v2.0_Chr0c11g0499581 Rosa chinensis
RcHm_v2.0_Chr5g0049691 Rosa chinensis
RcHm_v2.0_Chr5g0049701 Rosa chinensis
RcHm_v2.0_Chr7g0230591 Rosa chinensis
RcHm_v2.0_Chr7g0230601 Rosa chinensis
RcHm_v2.0_Chr7g0231161 Rosa chinensis
RcHm_v2.0_Chr7g0231171 Rosa chinensis
RcHm_v2.0_Chr7g0231181 Rosa chinensis
RcHm_v2.0_Chr7g0236141 Rosa chinensis
RcHm_v2.0_Chr7g0236431 Rosa chinensis
RcHm_v2.0_Chr7g0236461 Rosa chinensis
RcHm_v2.0_Chr7g0236501 Rosa chinensis
Rhsim09G0179600 Rhododendron simsii
Sabra08G0053500 Salix brachista
SalBow3G1147 Salvia bowleyana
Sc10g0002560 Simmondsia chinensis
Sed0002460 Sechium edule
Sed0025167 Sechium edule
SEGI_17620 Sequoiadendron giganteum
SGA_v2.0_scaffold60G20969 Striga asiatica
SHI28818 Sapria himalayana
SHI28819 Sapria himalayana
SMO142G0069 Selaginella moellendorffii
Solyc06g074860.2 Solanum lycopersicum
Solyc06g074870.3 Solanum lycopersicum
Solyc06g074880.1 Solanum lycopersicum
Sopen06g031290 Solanum pennellii
Sp6g37360 Schrenkiella parvula
TAR357G0004 Trochodendron aralioides
TAR362G0045 Trochodendron aralioides
THA.LOC104816534 Tarenaya hassleriana
Thecc.10G012000 Theobroma cacao
Thhalv10013002m.g Eutrema salsugineum
TPR.G25337 Trifolium pratense
TPR.G25338 Trifolium pratense
TPR.G38454 Trifolium pratense
TWI09G1305 Tripterygium wilfordii
unitig_46.g18609 Utricularia gibba
vmacro10020 Vaccinium macrocarpon
VMungo0647G0293 Vigna mungo
Zm00001eb297000 Zea mays
Zm00001eb297030 Zea mays

User provided reference genes

Program Settings