Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A08p18330 Brassica napus
Aa31LG2G17760 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis
Actinidia19099 Actinidia chinensis
Actinidia19316 Actinidia chinensis
AL4G16790 Arabidopsis lyrata
AL7G19680 Arabidopsis lyrata
Aqoxy3G01032 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea
AT2G25355 Arabidopsis thaliana
AT4G32175 Arabidopsis thaliana
ATR0680G372 Amborella trichopoda
Atru.chr9.2461 Acer truncatum
AUR62008215 Chenopodium quinoa
AUR62030968 Chenopodium quinoa
BcaB03g12733 Brassica carinata
BcaC01g01036 Brassica carinata
BolC3t21057H Brassica oleracea
BraA08t33790Z Brassica rapa
CAN.G110.1 Capsicum annuum
CAN.G628.78 Capsicum annuum
CANSAT64G1060 Cannabis sativa
CARHR059710 Cardamine hirsuta
CARHR240100 Cardamine hirsuta
Carub.0004s0503 Capsella rubella
Carub.0007s0838 Capsella rubella
Ca_06453_v3 Cicer arietinum L.
Ca_07701_v3 Cicer arietinum L.
Ca_22423_v3 Cicer arietinum L.
Ca_24957_v3 Cicer arietinum L.
CBR_g61059 Chara braunii
Cc00_g18100 Coffea canephora
Cc00_g25260 Coffea canephora
Cc00_g33640 Coffea canephora
Cc04_g13970 Coffea canephora
CDE11G0116 Ceratophyllum demersum
Cfa024128 Carpinus fangiana
Ciclev10021986m.g Citrus clementina
CiPaw.11G026900 Carya illinoinensis
ClCG06G016990 Citrullus lanatus
COL.COLO4_30028 Corchorus olitorius
Cpa.g.sc124.56 Carica papaya
Cre07.g319900 Chlamydomonas reinhardtii
CsaV3_1G001530 Cucumis sativus L.
CSS0008435 Camellia sinensis var. sinensis
CSS0025503 Camellia sinensis var. sinensis
CSS0039197 Camellia sinensis var. sinensis
CSS0048825 Camellia sinensis var. sinensis
DCAR_016485 Daucus carota
DCAR_028017 Daucus carota
Dinv02900 Davidia involucrata
ECA232G2959 Erigeron canadensis
EL10Ac5g10752 Beta vulgaris
Eucgr.B00371 Eucalyptus grandis
FAN04G0366 Fragaria x ananassa
FAN08G1047 Fragaria x ananassa
FAN13G1078 Fragaria x ananassa
FAN18G2015 Fragaria x ananassa
FAN18G2734 Fragaria x ananassa
FvH4_5g05270 Fragaria vesca
Glyma.01G053700 Glycine max
Glyma.02G112000 Glycine max
Glyma.19G045000 Glycine max
Gohir.A03G097600 Gossypium hirsutum
Gohir.D02G116700 Gossypium hirsutum
Gorai.005G137000 Gossypium raimondii
GSVIVG01007738001 Vitis vinifera
HanXRQChr16g0504011 Helianthus annuus
HanXRQChr16g0526511 Helianthus annuus
Haze_07464 Corylus avellana
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla
HPP92_005895 Vanilla planifolia
Hund09433 Selenicereus undatus
Lalb_Chr10g0098541 Lupinus albus
Lalb_Chr10g0099701 Lupinus albus
Lj2g0019057 Lotus japonicus
Lj5A124T65 Lonicera japonica
Lsat_1_v5_gn_4_75321 Lactuca sativa
Manes.14G066300 Manihot esculenta
Mapoly0033s0011 Marchantia polymorpha
MBI16_g05634_MAGBIO Magnolia biondii
MCO01G631 Micromonas commoda
MD06G1174300 Malus domestica
MD06G1174500 Malus domestica
MD14G1181100 Malus domestica
Medtr5g009430 Medicago truncatula
Medtr5g009450 Medicago truncatula
Medtr5g043110 Medicago truncatula
MELO3C026290.2 Cucumis melo
Migut.I00016 Erythranthe guttata
MSTRG.11448 Avicennia marina
Nitab4.5_0000003g0580 Nicotiana tabacum
Nitab4.5_0000866g0170 Nicotiana tabacum
Nn3g16872 Nelumbo nucifera
Oeu005668.1 Olea europaea
Oeu035987.1 Olea europaea
Os01g0661400 Oryza sativa ssp. japonica
Os01g0891400 Oryza sativa ssp. japonica
Peaxi162Scf00689g00228 Petunia axillaris
PGR083G2070 Punica granatum
PGSC0003DMG400027091 Solanum tuberosum
PGSC0003DMG400042364 Solanum tuberosum
Phvul.002G091200 Phaseolus vulgaris
Phvul.003G111100 Phaseolus vulgaris
Potri.012G080300 Populus trichocarpa
Potri.015G075400 Populus trichocarpa
Pp3c9_4960 Physcomitrium patens
PRCOL_00002933 Prasinoderma coloniale
Prupe.5G174300 Prunus persica
Psat2g127400 Pisum sativum
PSO017G4490 Papaver somniferum
PSO384G3338 Papaver somniferum
PSO478G0146 Papaver somniferum
QL02p024044 Quercus lobata
QL02p027014 Quercus lobata
QL02p100995 Quercus lobata
QL02p101061 Quercus lobata
QL02p101105 Quercus lobata
QL10p011820 Quercus lobata
RcHm_v2.0_Chr7g0193601 Rosa chinensis
Rhsim12G0164400 Rhododendron simsii
Sabra12G0057400 Salix brachista
SalBow3G4197 Salvia bowleyana
Sc10g0010060 Simmondsia chinensis
Sed0007118 Sechium edule
Sed0013198 Sechium edule
SEGI_00924 Sequoiadendron giganteum
SEGI_09107 Sequoiadendron giganteum
SEGI_09265 Sequoiadendron giganteum
SEGI_17588 Sequoiadendron giganteum
SEGI_26695 Sequoiadendron giganteum
SEGI_39775 Sequoiadendron giganteum
SGA_v2.0_scaffold90G27942 Striga asiatica
SHI17043 Sapria himalayana
SMO358G0755 Selaginella moellendorffii
Solyc06g071460.3 Solanum lycopersicum
Sopen06g027740 Solanum pennellii
Sp7g29960 Schrenkiella parvula
TAR374G0909 Trochodendron aralioides
THA.LOC104801749 Tarenaya hassleriana
THA.LOC104807116 Tarenaya hassleriana
THA.LOC104815465 Tarenaya hassleriana
THA.LOC104824976 Tarenaya hassleriana
Thecc.03G011300 Theobroma cacao
Thhalv10026115m.g Eutrema salsugineum
TPR.G14966 Trifolium pratense
TPR.G19928 Trifolium pratense
TWI15G0781 Tripterygium wilfordii
TWI53G1063 Tripterygium wilfordii
unitig_52.g17486 Utricularia gibba
vmacro16607 Vaccinium macrocarpon
VMungo1215G1703 Vigna mungo
VMungo1215G3307 Vigna mungo
Zm00001eb157720 Zea mays
Zm00001eb157740 Zea mays
Zm00001eb359590 Zea mays

User provided reference genes

Program Settings