Gene: Os01g0661400

General Information

Structural Information

  • Species Oryza sativa ssp. japonica
  • Gene Identifier Os01g0661400
  • Transcript Identifier Os01t0661400-01
  • Gene Type Coding gene
  • Location chr01 : 27004383-27007020 : positive

Gene Family Information

  • ID HOM05D004647
  • #Genes/#Species 157/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Os01t0661400-01
  • MSU-ID LOC_Os01g47256.1
  • MSU-ID LOC_Os01g47256.2
  • MSU-ID LOC_Os01g47256.3
  • MSU-ID LOC_Os01g47256.4
  • uniprot Q0JKN6

Descriptions

  • Description S1, RNA binding domain containing protein.
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000467
IBA
GOA Databaseexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0034475
IBA
GOA DatabaseU4 snRNA 3'-end processing
GO:0034427
IBA
GOA Databasenuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0043928
IBA
GOA Databaseexonucleolytic catabolism of deadenylated mRNA
GO:0071051
IBA
GOA Databasepolyadenylation-dependent snoRNA 3'-end processing
GO:0071049
IBA
GOA Databasenuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription
GO:0071038
IBA
GOA Databasenuclear polyadenylation-dependent tRNA catabolic process
GO:0071035
IBA
GOA Databasenuclear polyadenylation-dependent rRNA catabolic process
GO:0071034
IBA
GOA DatabaseCUT catabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IBA
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000178
IBA
IEA
GOA Databaseexosome (RNase complex)
GO:0000178
IEA
InterProexosome (RNase complex)
GO:0000176
IBA
GOA Databasenuclear exosome (RNase complex)
GO:0000177
IBA
GOA Databasecytoplasmic exosome (RNase complex)
GO:0005737
IEA
GOA Databasecytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036612 K Homology domain, type 1 superfamily
IPR004088 K Homology domain, type 1
IPR026699 Exosome complex RNA-binding protein 1/RRP40/RRP4
IPR012340 Nucleic acid-binding, OB-fold
IPR037319 Rrp40, S1 domain
Mapman id Description
16.4.1.1.1 RNA processing.RNA surveillance.exosome complex.EXO9 core complex.component RRP40