Gene: AT4G32175
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G32175
- Transcript Identifier AT4G32175.1
- Gene Type Coding gene
- Location Chr4 : 15535555-15537537 : positive
Gene Family Information
- ID HOM05D004647
- #Genes/#Species 157/98
- Phylogenetic origin
- ID ORTHO05D005349
- #Genes/#Species 159/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT4G32175.1
- uniprot Q500X1
Descriptions
- Description PNAS-3-like protein
- Computational description PNAS-3 related; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: PNAS-3 related (TAIR:AT2G25355.1); Has 535 Blast hits to 535 proteins in 248 species: Archae - 104; Bacteria - 0; Metazoa - 113; Fungi - 163; Plants - 59; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0071051 | IBA | Gene Ontology | polyadenylation-dependent snoRNA 3'-end processing | 1 |
| GO:0071034 | IBA | Gene Ontology | CUT catabolic process | 1 |
| GO:0043928 | IBA | Gene Ontology | exonucleolytic catabolism of deadenylated mRNA | 1 |
| GO:0034475 | IBA | Gene Ontology | U4 snRNA 3'-end processing | 1 |
| GO:0034427 | IBA | Gene Ontology | nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | 1 |
| GO:0000467 | IBA | Gene Ontology | exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1 |
| GO:0071049 | IBA | Gene Ontology | nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription | 1 |
| GO:0071035 | IBA | Gene Ontology | nuclear polyadenylation-dependent rRNA catabolic process | 1 |
| GO:0071038 | IBA | Gene Ontology | nuclear polyadenylation-dependent tRNA catabolic process | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0003723 | IBA | Gene Ontology | RNA binding | 1 |
| GO:0003723 | IEA | InterPro | RNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000178 | IEA | GOA Database | exosome (RNase complex) | |
| GO:0000178 | IBA | Gene Ontology | exosome (RNase complex) | 1 |
| GO:0000178 | IEA | InterPro | exosome (RNase complex) | |
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0009507 | ISM | Gene Ontology | chloroplast | |
| GO:0000176 | IBA | Gene Ontology | nuclear exosome (RNase complex) | 1 |
| GO:0000177 | IBA | Gene Ontology | cytoplasmic exosome (RNase complex) | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.4.1.1.1 | RNA processing.RNA surveillance.exosome complex.EXO9 core complex.component RRP40 |