Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p41850 Brassica napus
A05p28190 Brassica napus
Aa31LG8G7430 Aethionema arabicum
Actinidia35287 Actinidia chinensis
Ah.04g165340 Amaranthus hybridus
AL3G34510 Arabidopsis lyrata
Aqoxy1G03944 Aquilegia oxysepala
Aqoxy5G02435 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea
AT3G20630 Arabidopsis thaliana
ATR1132G023 Amborella trichopoda
Atru.chr2.2938 Acer truncatum
AUR62029293 Chenopodium quinoa
AUR62041167 Chenopodium quinoa
BcaB04g19118 Brassica carinata
BcaB06g26128 Brassica carinata
BcaC01g03545 Brassica carinata
BcaC05g28303 Brassica carinata
BolC3t17413H Brassica oleracea
BolC5t33082H Brassica oleracea
BraA03t13338Z Brassica rapa
BraA05t21700Z Brassica rapa
C03p51230 Brassica napus
C05p43630 Brassica napus
CAN.G162.111 Capsicum annuum
CANSAT11G0334 Cannabis sativa
CARHR096430 Cardamine hirsuta
Carub.0003s2061 Capsella rubella
Ca_01795_v3 Cicer arietinum L.
CBR_g17932 Chara braunii
CBR_g76006 Chara braunii
Cc05_g12790 Coffea canephora
CDE01G0428 Ceratophyllum demersum
Cfa020489 Carpinus fangiana
Ciclev10007478m.g Citrus clementina
CiPaw.11G178500 Carya illinoinensis
ClCG11G018570 Citrullus lanatus
COL.COLO4_09498 Corchorus olitorius
Cpa.g.sc12.20 Carica papaya
Cre02.g080350 Chlamydomonas reinhardtii
CsaV3_3G044300 Cucumis sativus L.
CSS0001646 Camellia sinensis var. sinensis
CSS0013066 Camellia sinensis var. sinensis
DCAR_008692 Daucus carota
DCAR_027147 Daucus carota
Dinv22351 Davidia involucrata
Duzib170G0088 Durio zibethinus
ECA240G1374 Erigeron canadensis
EL10Ac4g08041 Beta vulgaris
Eucgr.F01066 Eucalyptus grandis
FAN11G0387 Fragaria x ananassa
FAN16G3737 Fragaria x ananassa
FAN21G1304 Fragaria x ananassa
FAN25G2975 Fragaria x ananassa
FvH4_3g21160 Fragaria vesca
Glyma.06G255000 Glycine max
Glyma.06G271300 Glycine max
Glyma.12G146600 Glycine max
Gohir.A08G020600 Gossypium hirsutum
Gohir.D05G357560 Gossypium hirsutum
Gohir.D08G031200 Gossypium hirsutum
Gohir.D10G199250 Gossypium hirsutum
Gohir.D11G177550 Gossypium hirsutum
Gorai.004G028800 Gossypium raimondii
GSVIVG01014461001 Vitis vinifera
GSVIVG01014462001 Vitis vinifera
GSVIVG01014463001 Vitis vinifera
GSVIVG01014465001 Vitis vinifera
GSVIVG01015714001 Vitis vinifera
GSVIVG01015715001 Vitis vinifera
GSVIVG01015716001 Vitis vinifera
HanXRQChr03g0076071 Helianthus annuus
HanXRQChr13g0407291 Helianthus annuus
Haze_09550 Corylus avellana
Haze_26164 Corylus avellana
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla
HPP92_005995 Vanilla planifolia
Hund02178 Selenicereus undatus
Lalb_Chr02g0159341 Lupinus albus
Lalb_Chr06g0175311 Lupinus albus
Lj1g0002875 Lotus japonicus
Lj1g0005584 Lotus japonicus
Lj1g0025632 Lotus japonicus
Lj3g0027191 Lotus japonicus
Lj8A161G44 Lonicera japonica
Lj8A161T45 Lonicera japonica
Lj8C162G4 Lonicera japonica
Lsat_1_v5_gn_0_5341 Lactuca sativa
Manes.03G117700 Manihot esculenta
Manes.15G081800 Manihot esculenta
Mapoly0028s0083 Marchantia polymorpha
MCO15G328 Micromonas commoda
MD03G1217200 Malus domestica
MD11G1234900 Malus domestica
MD15G1178000 Malus domestica
MD15G1178100 Malus domestica
Medtr2g081180 Medicago truncatula
Medtr4g077470 Medicago truncatula
Medtr4g077475 Medicago truncatula
Medtr8g464880 Medicago truncatula
MELO3C018182.2 Cucumis melo
Migut.H01895 Erythranthe guttata
MSTRG.12935 Avicennia marina
Nitab4.5_0000092g0270 Nicotiana tabacum
Nitab4.5_0000297g0190 Nicotiana tabacum
Nitab4.5_0001252g0070 Nicotiana tabacum
Nitab4.5_0001386g0060 Nicotiana tabacum
Nn1g06827 Nelumbo nucifera
Nn6g32116 Nelumbo nucifera
Nn6g32117 Nelumbo nucifera
Nn8g40041 Nelumbo nucifera
Nn8g40042 Nelumbo nucifera
Oeu060533.1 Olea europaea
Os01g0177200 Oryza sativa ssp. japonica
Peaxi162Scf00177g00118 Petunia axillaris
Peaxi162Scf01216g00070 Petunia axillaris
PGR083G1074 Punica granatum
Phvul.011G156100 Phaseolus vulgaris
Potri.001G408800 Populus trichocarpa
Potri.011G125800 Populus trichocarpa
Pp3c19_17130 Physcomitrium patens
Pp3c21_16740 Physcomitrium patens
PRCOL_00003961 Prasinoderma coloniale
Prupe.4G192200 Prunus persica
Psat5g247520 Pisum sativum
PSO210G4872 Papaver somniferum
PSO832G2674 Papaver somniferum
QL08p017220 Quercus lobata
RcHm_v2.0_Chr5g0036241 Rosa chinensis
Rhsim03G0198500 Rhododendron simsii
RhsimUnG0257500 Rhododendron simsii
Sabra11G0111700 Salix brachista
Sabra16G0271600 Salix brachista
SalBow7G1127 Salvia bowleyana
Sc16g0006700 Simmondsia chinensis
Sed0014921 Sechium edule
Sed0018829 Sechium edule
SEGI_22005 Sequoiadendron giganteum
SEGI_31233 Sequoiadendron giganteum
SEGI_32785 Sequoiadendron giganteum
SGA_v2.0_scaffold9G04963 Striga asiatica
SHI10079 Sapria himalayana
SHI10080 Sapria himalayana
SMO347G0465 Selaginella moellendorffii
Solyc07g063650.4 Solanum lycopersicum
Sopen07g031830 Solanum pennellii
Sp3g18670 Schrenkiella parvula
TAR011G0002 Trochodendron aralioides
TAR624G0100 Trochodendron aralioides
TAR624G1198 Trochodendron aralioides
TAR626G1658 Trochodendron aralioides
THA.LOC104816919 Tarenaya hassleriana
Thecc.07G069000 Theobroma cacao
Thhalv10020069m.g Eutrema salsugineum
TPR.G1046 Trifolium pratense
TPR.G32881 Trifolium pratense
TWI39G0400 Tripterygium wilfordii
unitig_21.g20140 Utricularia gibba
unitig_699.g19210 Utricularia gibba
vmacro09573 Vaccinium macrocarpon
VMungo1127G0244 Vigna mungo
Zm00001eb336890 Zea mays

User provided reference genes

Program Settings