Gene: TAR624G0100
General Information
Structural Information
- Species Trochodendron aralioides
- Gene Identifier TAR624G0100
- Transcript Identifier TAR624G0100.1
- Gene Type Coding gene
- Location group9 : 57875584-57930827 : negative
Gene Family Information
- ID HOM05D004364
- #Genes/#Species 164/97
- Phylogenetic origin
- ID ORTHO05D006299
- #Genes/#Species 144/97
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- id evm.TU.group9.1680
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016579 | IEA | InterPro | protein deubiquitination | |
| GO:0071370 | ISO | PLAZA Integrative Orthology | cellular response to gibberellin stimulus | AT3G20630 |
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT3G20630 |
| GO:0048767 | ISO | PLAZA Integrative Orthology | root hair elongation | AT3G20630 |
| GO:0009965 | ISO | PLAZA Integrative Orthology | leaf morphogenesis | AT3G20630 |
| GO:0042127 | ISO | PLAZA Integrative Orthology | regulation of cell population proliferation | AT3G20630 |
| GO:0009734 | ISO | PLAZA Integrative Orthology | auxin-activated signaling pathway | AT3G20630 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0004843 | IEA | InterPro | thiol-dependent deubiquitinase | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G20630 |
| GO:0061815 | ISO | PLAZA Integrative Orthology | deubiquitinase, acting on linear ubiquitin | AT3G20630 |
| GO:1990450 | ISO | PLAZA Integrative Orthology | linear polyubiquitin binding | AT3G20630 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT3G20630 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT3G20630 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001005 | SANT/Myb domain |
| IPR038765 | Papain-like cysteine peptidase superfamily |
| IPR015940 | Ubiquitin-associated domain |
| IPR041432 | Ubiquitinyl hydrolase, variant UBP zinc finger |
| IPR001607 | Zinc finger, UBP-type |
| IPR001394 | Peptidase C19, ubiquitin carboxyl-terminal hydrolase |
| IPR009057 | Homeobox-like domain superfamily |
| IPR017930 | Myb domain |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| Mapman id | Description |
|---|---|
| 15.5.2.1 | RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB) |
| 19.2.1.3.1.6 | Protein homeostasis.ubiquitin-proteasome system.N-degron pathways.Pro/N-degron pathway.GID ubiquitination complex.deubiquitinase component (GID6/UBP14) |