Gene: SHI10080

General Information

Structural Information

Species Sapria himalayana
Gene Identifier SHI10080
Transcript Identifier SHI10080-RA
Gene Type Coding gene
Location scaffold10_15062905 : 6769553-6826718 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D004364
#Genes/#Species 164/97
Phylogenetic origin

ID ORTHO05D006299
#Genes/#Species 144/97
Phylogenetic origin

Gene Duplication Information

Tandem Duplication Tandem duplicate

Labels

Identifiers

tid SHI10080-RA

Descriptions

Ortholog descriptions

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016579	ISO	PLAZA Integrative Orthology	protein deubiquitination	AT3G20630
GO:0009793	ISO	PLAZA Integrative Orthology	embryo development ending in seed dormancy	AT3G20630
GO:0048767	ISO	PLAZA Integrative Orthology	root hair elongation	AT3G20630
GO:0009965	ISO	PLAZA Integrative Orthology	leaf morphogenesis	AT3G20630
GO:0042127	ISO	PLAZA Integrative Orthology	regulation of cell population proliferation	AT3G20630
GO:0009734	ISO	PLAZA Integrative Orthology	auxin-activated signaling pathway	AT3G20630
GO:0071370	ISO	PLAZA Integrative Orthology	cellular response to gibberellin stimulus	AT3G20630

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0008270	IEA	InterPro	zinc ion binding
GO:0061815	ISO	PLAZA Integrative Orthology	deubiquitinase, acting on linear ubiquitin	AT3G20630
GO:1990450	ISO	PLAZA Integrative Orthology	linear polyubiquitin binding	AT3G20630
GO:0004843	ISO	PLAZA Integrative Orthology	thiol-dependent deubiquitinase	AT3G20630
GO:0005515	ISO	PLAZA Integrative Orthology	protein binding	AT3G20630

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	ISO	PLAZA Integrative Orthology	nucleus	AT3G20630
GO:0005829	ISO	PLAZA Integrative Orthology	cytosol	AT3G20630

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR001607	Zinc finger, UBP-type
IPR041432	Ubiquitinyl hydrolase, variant UBP zinc finger
IPR013083	Zinc finger, RING/FYVE/PHD-type

Mapman id	Description
19.2.1.3.1.6	Protein homeostasis.ubiquitin-proteasome system.N-degron pathways.Pro/N-degron pathway.GID ubiquitination complex.deubiquitinase component (GID6/UBP14)