Gene: Carub.0003s2061

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0003s2061
  • Transcript Identifier Carub.0003s2061.2
  • Gene Type Coding gene
  • Location scaffold_3 : 7387675-7393587 : negative

Gene Family Information

  • ID HOM05D004364
  • #Genes/#Species 164/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0003s2061.v1.1
  • pacid 39239786
  • synonym Carubv10015812m.g

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016579
IEA
InterProprotein deubiquitination
GO:0071370
ISO
PLAZA Integrative Orthologycellular response to gibberellin stimulus AT3G20630
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT3G20630
GO:0048767
ISO
PLAZA Integrative Orthologyroot hair elongation AT3G20630
GO:0009965
ISO
PLAZA Integrative Orthologyleaf morphogenesis AT3G20630
GO:0042127
ISO
PLAZA Integrative Orthologyregulation of cell population proliferation AT3G20630
GO:0009734
ISO
PLAZA Integrative Orthologyauxin-activated signaling pathway AT3G20630

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004843
IEA
InterProthiol-dependent deubiquitinase
GO:0008270
IEA
InterProzinc ion binding
GO:0005515
IEA
InterProprotein binding
GO:0061815
ISO
PLAZA Integrative Orthologydeubiquitinase, acting on linear ubiquitin AT3G20630
GO:1990450
ISO
PLAZA Integrative Orthologylinear polyubiquitin binding AT3G20630

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G20630
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G20630

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase
IPR038765 Papain-like cysteine peptidase superfamily
IPR016652 Ubiquitinyl hydrolase
IPR015940 Ubiquitin-associated domain
IPR041432 Ubiquitinyl hydrolase, variant UBP zinc finger
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR001607 Zinc finger, UBP-type
IPR009060 UBA-like superfamily
Mapman id Description
19.2.1.3.1.6 Protein homeostasis.ubiquitin-proteasome system.N-degron pathways.Pro/N-degron pathway.GID ubiquitination complex.deubiquitinase component (GID6/UBP14)