Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p20950 Brassica napus
A06p17220 Brassica napus
A07p28330 Brassica napus
A07p42450 Brassica napus
Aa31LG4G6900 Aethionema arabicum
Aa31LG7G5300 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2023 Anthoceros agrestis
Actinidia06668 Actinidia chinensis
Ah.05g167900 Amaranthus hybridus
AL1G34240 Arabidopsis lyrata
AL2G36980 Arabidopsis lyrata
Aqoxy5G02098 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.9PQ1GY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XJQY2Y Arachis hypogaea
AT1G21190 Arabidopsis thaliana
AT1G76860 Arabidopsis thaliana
ATR0772G183 Amborella trichopoda
Atru.chr13.2143 Acer truncatum
AUR62013577 Chenopodium quinoa
AUR62026713 Chenopodium quinoa
BcaB02g07078 Brassica carinata
BcaB05g25014 Brassica carinata
BcaB07g32108 Brassica carinata
BcaC03g15707 Brassica carinata
BcaC05g26025 Brassica carinata
BcaC08g45508 Brassica carinata
BcaC08g47186 Brassica carinata
BolC2t09428H Brassica oleracea
BolC5t30689H Brassica oleracea
BolC6t38306H Brassica oleracea
BolC6t40126H Brassica oleracea
BraA02t07126Z Brassica rapa
BraA06t24824Z Brassica rapa
BraA07t30470Z Brassica rapa
BraA07t31770Z Brassica rapa
C02p34120 Brassica napus
C05p19920 Brassica napus
C06p31770 Brassica napus
C06p51010 Brassica napus
CAN.G249.12 Capsicum annuum
CANSAT25G0019 Cannabis sativa
CARHR021640 Cardamine hirsuta
CARHR070370 Cardamine hirsuta
Carub.0001s2062 Capsella rubella
Carub.0002s2374 Capsella rubella
Ca_28109_v3 Cicer arietinum L.
Cc10_g14760 Coffea canephora
CDE06G1840 Ceratophyllum demersum
CDE08G0955 Ceratophyllum demersum
Cfa018326 Carpinus fangiana
Cfa023910 Carpinus fangiana
Ciclev10002950m.g Citrus clementina
Ciclev10003306m.g Citrus clementina
CiPaw.15G016800 Carya illinoinensis
CiPaw.16G013200 Carya illinoinensis
ClCG08G006960 Citrullus lanatus
COL.COLO4_37834 Corchorus olitorius
Cpa.g.sc2145.2 Carica papaya
Cre16.g662300 Chlamydomonas reinhardtii
CsaV3_1G019700 Cucumis sativus L.
CsaV3_6G005290 Cucumis sativus L.
CSS0019157 Camellia sinensis var. sinensis
DCAR_014432 Daucus carota
Dinv09936 Davidia involucrata
Dinv25856 Davidia involucrata
Dinv41090 Davidia involucrata
Duzib093G0799 Durio zibethinus
Duzib116G0179 Durio zibethinus
ECA236G1806 Erigeron canadensis
EL10Ac1g01537 Beta vulgaris
Eucgr.F02710 Eucalyptus grandis
FAN15G1801 Fragaria x ananassa
FAN20G2578 Fragaria x ananassa
FAN24G0951 Fragaria x ananassa
FAN27G2615 Fragaria x ananassa
FvH4_2g13861 Fragaria vesca
Glyma.02G082300 Glycine max
Glyma.10G120000 Glycine max
Glyma.16G167900 Glycine max
Gohir.A02G112705 Gossypium hirsutum
Gohir.A05G243000 Gossypium hirsutum
Gohir.D03G060607 Gossypium hirsutum
Gohir.D05G244500 Gossypium hirsutum
Gorai.002G055500 Gossypium raimondii
Gorai.009G253600 Gossypium raimondii
GSVIVG01034520001 Vitis vinifera
HanXRQChr06g0182631 Helianthus annuus
HanXRQChr11g0339331 Helianthus annuus
Haze_17748 Corylus avellana
Haze_27742 Corylus avellana
Hma1.2p1_0006F.1_g004910 Hydrangea macrophylla
Hma1.2p1_0105F.1_g050760 Hydrangea macrophylla
HPP92_016150 Vanilla planifolia
Hund26698 Selenicereus undatus
Lalb_Chr01g0009621 Lupinus albus
Lalb_Chr03g0035271 Lupinus albus
Lj1g0021939 Lotus japonicus
Lj2g0026454 Lotus japonicus
Lsat_1_v5_gn_7_71840 Lactuca sativa
Manes.02G178900 Manihot esculenta
Manes.18G091400 Manihot esculenta
Mapoly0008s0084 Marchantia polymorpha
MBI09_g18621_MAGBIO Magnolia biondii
MCO12G407 Micromonas commoda
MD05G1024000 Malus domestica
MD10G1024500 Malus domestica
MD10G1024600 Malus domestica
Medtr4g083170 Medicago truncatula
MELO3C008344.2 Cucumis melo
Migut.C01015 Erythranthe guttata
Migut.N03226 Erythranthe guttata
MSTRG.22373 Avicennia marina
Nitab4.5_0000004g0160 Nicotiana tabacum
Nitab4.5_0000964g0020 Nicotiana tabacum
Nitab4.5_0002064g0050 Nicotiana tabacum
Nitab4.5_0010284g0010 Nicotiana tabacum
Nn1g06097 Nelumbo nucifera
Nn5g28727 Nelumbo nucifera
Oeu011940.1 Olea europaea
Oeu046026.1 Olea europaea
Os01g0866700 Oryza sativa ssp. japonica
Peaxi162Scf00025g02218 Petunia axillaris
Peaxi162Scf00583g00530 Petunia axillaris
PGR042G0059 Punica granatum
PGSC0003DMG400003988 Solanum tuberosum
Phvul.004G095700 Phaseolus vulgaris
Phvul.004G129000 Phaseolus vulgaris
Potri.002G068800 Populus trichocarpa
Potri.005G191600 Populus trichocarpa
Pp3c24_12260 Physcomitrium patens
PRCOL_00001118 Prasinoderma coloniale
Prupe.3G148200 Prunus persica
Prupe.8G028400 Prunus persica
Psat7g153480 Pisum sativum
PSO541G1854 Papaver somniferum
PSO675G7538 Papaver somniferum
QL02p024017 Quercus lobata
QL09p017237 Quercus lobata
RcHm_v2.0_Chr6g0275571 Rosa chinensis
RcHm_v2.0_Chr6g0275581 Rosa chinensis
Rhsim06G0071000 Rhododendron simsii
Rhsim06G0135800 Rhododendron simsii
Rhsim10G0141800 Rhododendron simsii
Sabra02G0054100 Salix brachista
Sabra05G0146400 Salix brachista
SalBow4G0880 Salvia bowleyana
SalBow6G5104 Salvia bowleyana
Sc02g0004120 Simmondsia chinensis
Sed0010346 Sechium edule
Sed0019016 Sechium edule
SEGI_01220 Sequoiadendron giganteum
SHI20484 Sapria himalayana
SMO169G0100 Selaginella moellendorffii
Solyc11g005370.2 Solanum lycopersicum
Sopen11g001380 Solanum pennellii
Sp1g18830 Schrenkiella parvula
Sp5g31990 Schrenkiella parvula
TAR381G0202 Trochodendron aralioides
TAR625G0830 Trochodendron aralioides
TAR628G0743 Trochodendron aralioides
THA.LOC104812039 Tarenaya hassleriana
THA.LOC104813712 Tarenaya hassleriana
Thecc.08G150600 Theobroma cacao
Thhalv10019321m.g Eutrema salsugineum
TPR.G14063 Trifolium pratense
TPR.G8174 Trifolium pratense
TWI34G0684 Tripterygium wilfordii
TWI60G1706 Tripterygium wilfordii
unitig_21.g20177 Utricularia gibba
unitig_744.g24567 Utricularia gibba
vmacro12446 Vaccinium macrocarpon
vmacro12827 Vaccinium macrocarpon
vmacro12828 Vaccinium macrocarpon
Zm00001eb146730 Zea mays

User provided reference genes

Program Settings