Gene: Solyc11g005370.2

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc11g005370.2
  • Transcript Identifier Solyc11g005370.2.1
  • Gene Type Coding gene
  • Location SL4.0ch11 : 309842-313319 : negative

Gene Family Information

  • ID HOM05D004026
  • #Genes/#Species 174/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc11g005370.2.1
  • uniprot A0A3Q7INH3
  • gene_id Solyc11g005370

Descriptions

  • Description U6 snRNA-associated Sm-like protein LSm3 (AHRD V3.3 *** A0A1U8F721_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0000398
IBA
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0033962
IBA
GOA DatabaseP-body assembly
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IBA
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1990726
IBA
GOA DatabaseLsm1-7-Pat1 complex
GO:0000932
IBA
GOA DatabaseP-body
GO:0005688
IBA
IEA
GOA DatabaseU6 snRNP
GO:0046540
IBA
IEA
GOA DatabaseU4/U6 x U5 tri-snRNP complex
GO:0071011
IBA
GOA Databaseprecatalytic spliceosome
GO:0071013
IBA
GOA Databasecatalytic step 2 spliceosome
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR010920 LSM domain superfamily
IPR001163 LSM domain, eukaryotic/archaea-type
IPR034105 Sm-like protein Lsm3
IPR040002 U6 snRNA-associated Sm-like protein Lsm3
Mapman id Description
16.2.3.3 RNA processing.pre-mRNA splicing.U6-associated LSm accessory ribonucleoprotein complex.component LSm3