Gene: AT1G76860

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G76860
  • Transcript Identifier AT1G76860.1
  • Gene Type Coding gene
  • Location Chr1 : 28854594-28855637 : negative

Gene Family Information

  • ID HOM05D004026
  • #Genes/#Species 174/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G76860.1
  • symbol LSM3B
  • full_name SM-like 3B
  • uniprot Q9C6K5

Descriptions

  • Description Small nuclear ribonucleoprotein family protein
  • Computational description Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT1G21190.1); Has 1289 Blast hits to 1289 proteins in 302 species: Archae - 306; Bacteria - 0; Metazoa - 397; Fungi - 221; Plants - 178; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IBA
Gene OntologymRNA splicing, via spliceosome1
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0033962
IBA
Gene OntologyP-body assembly1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IBA
Gene OntologyRNA binding1
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005737
IEA
GOA Databasecytoplasm
GO:0071013
IBA
Gene Ontologycatalytic step 2 spliceosome1
GO:1990726
IBA
Gene OntologyLsm1-7-Pat1 complex1
GO:0071011
IBA
Gene Ontologyprecatalytic spliceosome1
GO:0000932
IBA
Gene OntologyP-body1
GO:0046540
IBA
Gene OntologyU4/U6 x U5 tri-snRNP complex1
GO:0005688
IBA
Gene OntologyU6 snRNP1
GO:0005739
HDA
Gene Ontologymitochondrion2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001163 LSM domain, eukaryotic/archaea-type
IPR010920 LSM domain superfamily
IPR034105 Sm-like protein Lsm3
IPR040002 U6 snRNA-associated Sm-like protein Lsm3
Mapman id Description
16.2.3.3 RNA processing.pre-mRNA splicing.U6-associated LSm accessory ribonucleoprotein complex.component LSm3