Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p39600 Brassica napus
A05p19040 Brassica napus
A06p01830 Brassica napus
A06p01850 Brassica napus
A08p02160 Brassica napus
Aa31LG10G2540 Aethionema arabicum
Aa31LG8G3120 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis
Actinidia08971 Actinidia chinensis
Actinidia14363 Actinidia chinensis
Actinidia32764 Actinidia chinensis
Ah.01g006030 Amaranthus hybridus
Ah.01g021220 Amaranthus hybridus
AL1G60630 Arabidopsis lyrata
AL3G28620 Arabidopsis lyrata
Aqoxy7G01805 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea
AT1G52380 Arabidopsis thaliana
AT3G15970 Arabidopsis thaliana
ATR1120G115 Amborella trichopoda
Atru.chr1.3248 Acer truncatum
AUR62011621 Chenopodium quinoa
AUR62016436 Chenopodium quinoa
BcaB02g10997 Brassica carinata
BcaC01g01324 Brassica carinata
BcaC01g03847 Brassica carinata
BcaC08g43418 Brassica carinata
BcaC08g43420 Brassica carinata
BcaC08g43991 Brassica carinata
BolC3t17078H Brassica oleracea
BolC6t35869H Brassica oleracea
BolC6t35871H Brassica oleracea
BraA05t20804Z Brassica rapa
BraA06t23400Z Brassica rapa
BraA06t23402Z Brassica rapa
BraA08t32263Z Brassica rapa
C03p47980 Brassica napus
C03p90640 Brassica napus
C06p07830 Brassica napus
C06p07870 Brassica napus
C06p13960 Brassica napus
CAN.G395.16 Capsicum annuum
CAN.G438.59 Capsicum annuum
CANSAT56G2173 Cannabis sativa
CARHR042530 Cardamine hirsuta
CARHR091100 Cardamine hirsuta
Carub.0001s4138 Capsella rubella
Carub.0003s1570 Capsella rubella
Ca_20399_v3 Cicer arietinum L.
CBR_g38869 Chara braunii
Cc04_g03530 Coffea canephora
CDE06G1609 Ceratophyllum demersum
Cfa002057 Carpinus fangiana
Cfa024721 Carpinus fangiana
Ciclev10025626m.g Citrus clementina
CiPaw.01G240200 Carya illinoinensis
CiPaw.02G151900 Carya illinoinensis
ClCG09G002210 Citrullus lanatus
COL.COLO4_30356 Corchorus olitorius
Cpa.g.c31444.1 Carica papaya
Cre15.g641000 Chlamydomonas reinhardtii
CsaV3_7G033090 Cucumis sativus L.
CSS0004276 Camellia sinensis var. sinensis
CSS0044508 Camellia sinensis var. sinensis
DCAR_026310 Daucus carota
Dinv30518 Davidia involucrata
Dinv38052 Davidia involucrata
Duzib160G0939 Durio zibethinus
Duzib192G0576 Durio zibethinus
ECA247G1970 Erigeron canadensis
EL10Ac9g21982 Beta vulgaris
Eucgr.F02948 Eucalyptus grandis
FAN02G1452 Fragaria x ananassa
FAN05G4496 Fragaria x ananassa
FAN09G3670 Fragaria x ananassa
FvH4_6g31000 Fragaria vesca
Glyma.13G360300 Glycine max
Glyma.15G013600 Glycine max
Gohir.A02G122200 Gossypium hirsutum
Gohir.D03G074300 Gossypium hirsutum
Gorai.002G058700 Gossypium raimondii
GSVIVG01017123001 Vitis vinifera
HanXRQChr02g0032691 Helianthus annuus
HanXRQChr04g0096531 Helianthus annuus
HanXRQChr10g0314961 Helianthus annuus
Haze_16447 Corylus avellana
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla
HPP92_019977 Vanilla planifolia
HPP92_020042 Vanilla planifolia
HPP92_020043 Vanilla planifolia
Lalb_Chr14g0373481 Lupinus albus
Lalb_Chr22g0351201 Lupinus albus
Lalb_Chr24g0395791 Lupinus albus
Lj3g0018129 Lotus japonicus
Lj5C61T11 Lonicera japonica
Lj9P507T43 Lonicera japonica
Lsat_1_v5_gn_1_34841 Lactuca sativa
Manes.04G122500 Manihot esculenta
Manes.11G048200 Manihot esculenta
Mapoly0073s0079 Marchantia polymorpha
MBI01_g16632_MAGBIO Magnolia biondii
MBI04_g18158_MAGBIO Magnolia biondii
MBI04_g40091_MAGBIO Magnolia biondii
MBI04_g43353_MAGBIO Magnolia biondii
MBI04_g43354_MAGBIO Magnolia biondii
MBI04_g43355_MAGBIO Magnolia biondii
MCO12G345 Micromonas commoda
MD09G1214400 Malus domestica
MD17G1196800 Malus domestica
Medtr1g112060 Medicago truncatula
Medtr4g011930 Medicago truncatula
MELO3C024224.2 Cucumis melo
Migut.I00858 Erythranthe guttata
MSTRG.22695 Avicennia marina
MSTRG.4728 Avicennia marina
Nitab4.5_0000351g0150 Nicotiana tabacum
Nitab4.5_0000671g0020 Nicotiana tabacum
Nitab4.5_0002327g0010 Nicotiana tabacum
Nitab4.5_0006801g0020 Nicotiana tabacum
Nn2g11803 Nelumbo nucifera
Nn8g39239 Nelumbo nucifera
Oeu033481.1 Olea europaea
Os05g0349500 Oryza sativa ssp. japonica
Peaxi162Scf00015g10039 Petunia axillaris
PGR102G2609 Punica granatum
PGSC0003DMG400002641 Solanum tuberosum
PGSC0003DMG400016510 Solanum tuberosum
Phvul.005G172100 Phaseolus vulgaris
Potri.001G179100 Populus trichocarpa
Potri.003G056400 Populus trichocarpa
Pp3c3_6060 Physcomitrium patens
Pp3c3_6080 Physcomitrium patens
PRCOL_00002651 Prasinoderma coloniale
Prupe.3G072500 Prunus persica
Psat7g253000 Pisum sativum
PSO063G3399 Papaver somniferum
PSO782G4639 Papaver somniferum
QL05p024883 Quercus lobata
QL05p024997 Quercus lobata
RcHm_v2.0_Chr2g0137631 Rosa chinensis
Rhsim08G0220400 Rhododendron simsii
Rhsim12G0197200 Rhododendron simsii
Sabra01G0147800 Salix brachista
Sabra03G0031800 Salix brachista
SalBow2G1612 Salvia bowleyana
Sc15g0001250 Simmondsia chinensis
Sed0003438 Sechium edule
Sed0010123 Sechium edule
SEGI_02359 Sequoiadendron giganteum
SEGI_39159 Sequoiadendron giganteum
SGA_v2.0_scaffold5G02599 Striga asiatica
SHI24405 Sapria himalayana
Solyc03g120280.1 Solanum lycopersicum
Solyc06g066740.3 Solanum lycopersicum
Sopen03g039170 Solanum pennellii
Sopen06g025020 Solanum pennellii
Sp1g38990 Schrenkiella parvula
Sp3g14320 Schrenkiella parvula
TAR383G0140 Trochodendron aralioides
TAR626G0719 Trochodendron aralioides
TAR636G1173 Trochodendron aralioides
THA.LOC104810518 Tarenaya hassleriana
THA.LOC104818004 Tarenaya hassleriana
Thecc.06G085100 Theobroma cacao
Thhalv10011504m.g Eutrema salsugineum
Thhalv10020773m.g Eutrema salsugineum
TPR.G24152 Trifolium pratense
TWI18G1146 Tripterygium wilfordii
TWI75G1291 Tripterygium wilfordii
unitig_21.g20517 Utricularia gibba
unitig_744.g24336 Utricularia gibba
unitig_744.g24337 Utricularia gibba
vmacro18921 Vaccinium macrocarpon
VMungo1080G0623 Vigna mungo
Zm00001eb155830 Zea mays
Zm00001eb360880 Zea mays

User provided reference genes

Program Settings