Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p20580 Brassica napus
A07p17990 Brassica napus
Aa31LG5G8480 Aethionema arabicum
Aa31LG5G8490 Aethionema arabicum
Actinidia06362 Actinidia chinensis
Actinidia22473 Actinidia chinensis
Ah.08g222820 Amaranthus hybridus
Ah.15g099440 Amaranthus hybridus
AL4G20790 Arabidopsis lyrata
AL4G20820 Arabidopsis lyrata
Aqoxy2G00072 Aquilegia oxysepala
Aqoxy5G04179 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.F9X6AJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MWA09F Arachis hypogaea
AT2G27100 Arabidopsis thaliana
ATR0618G315 Amborella trichopoda
Atru.chr3.3010 Acer truncatum
AUR62001612 Chenopodium quinoa
AUR62020168 Chenopodium quinoa
BcaB01g03049 Brassica carinata
BcaB02g10072 Brassica carinata
BcaB06g28111 Brassica carinata
BcaC02g08283 Brassica carinata
BcaC02g10857 Brassica carinata
BolC4t23937H Brassica oleracea
BolC4t27166H Brassica oleracea
BraA04t17633Z Brassica rapa
BraA07t29518Z Brassica rapa
C04p24400 Brassica napus
C04p56360 Brassica napus
CAN.G65.214 Capsicum annuum
CAN.G65.215 Capsicum annuum
CAN.G651.1 Capsicum annuum
CANSAT54G1397 Cannabis sativa
CANSAT56G4085 Cannabis sativa
CARHR119470 Cardamine hirsuta
Carub.0004s0759 Capsella rubella
Carub.0004s0762 Capsella rubella
Ca_14021_v3 Cicer arietinum L.
Ca_24120_v3 Cicer arietinum L.
Ca_30267_v3 Cicer arietinum L.
CBR_g261 Chara braunii
Cc01_g07580 Coffea canephora
CDE02G2326 Ceratophyllum demersum
CDE04G0610 Ceratophyllum demersum
Cfa010256 Carpinus fangiana
Cfa010439 Carpinus fangiana
Ciclev10014331m.g Citrus clementina
CiPaw.13G047600 Carya illinoinensis
CiPaw.14G037800 Carya illinoinensis
ClCG03G014170 Citrullus lanatus
COL.COLO4_18368 Corchorus olitorius
Cpa.g.sc103.67 Carica papaya
Cre13.g575900 Chlamydomonas reinhardtii
CsaV3_1G042090 Cucumis sativus L.
CSS0011655 Camellia sinensis var. sinensis
CSS0037994 Camellia sinensis var. sinensis
DCAR_002130 Daucus carota
DCAR_031603 Daucus carota
DCAR_031604 Daucus carota
Dinv02325 Davidia involucrata
Dinv05234 Davidia involucrata
Duzib150G1090 Durio zibethinus
Duzib168G1536 Durio zibethinus
ECA240G0992 Erigeron canadensis
EL10Ac7g16220 Beta vulgaris
Eucgr.J00624 Eucalyptus grandis
FAN11G2711 Fragaria x ananassa
FAN16G3041 Fragaria x ananassa
FAN21G2928 Fragaria x ananassa
FAN25G1344 Fragaria x ananassa
FvH4_3g27130 Fragaria vesca
Glyma.04G128800 Glycine max
Glyma.06G314900 Glycine max
Glyma.08G227300 Glycine max
Gohir.A05G101000 Gossypium hirsutum
Gohir.A08G000080 Gossypium hirsutum
Gohir.A08G196300 Gossypium hirsutum
Gohir.A13G230000 Gossypium hirsutum
Gohir.D05G100800 Gossypium hirsutum
Gohir.D08G008600 Gossypium hirsutum
Gohir.D08G213400 Gossypium hirsutum
Gohir.D13G235500 Gossypium hirsutum
Gorai.004G001800 Gossypium raimondii
Gorai.004G227500 Gossypium raimondii
Gorai.009G104900 Gossypium raimondii
Gorai.013G266200 Gossypium raimondii
GSVIVG01027348001 Vitis vinifera
GSVIVG01037454001 Vitis vinifera
HanXRQChr02g0040941 Helianthus annuus
HanXRQChr03g0091691 Helianthus annuus
HanXRQChr03g0091701 Helianthus annuus
HanXRQChr04g0127701 Helianthus annuus
HanXRQChr13g0420901 Helianthus annuus
Haze_03393 Corylus avellana
Haze_03397 Corylus avellana
Haze_23662 Corylus avellana
Hma1.2p1_0218F.1_g092610 Hydrangea macrophylla
HPP92_015378 Vanilla planifolia
Hund18830 Selenicereus undatus
Hund20982 Selenicereus undatus
Lalb_Chr03g0032411 Lupinus albus
Lalb_Chr15g0079371 Lupinus albus
Lalb_Chr19g0132581 Lupinus albus
Lj1A274G37 Lonicera japonica
Lj1A274G38 Lonicera japonica
Lj3g0000355 Lotus japonicus
Lj3g0010266 Lotus japonicus
Lj3g0022474 Lotus japonicus
Lj3g0023562 Lotus japonicus
LjContig00266g0015480 Lotus japonicus
Lsat_1_v5_gn_3_116081 Lactuca sativa
Manes.04G052501 Manihot esculenta
Manes.11G111400 Manihot esculenta
Mapoly0065s0067 Marchantia polymorpha
MCO16G074 Micromonas commoda
MD00G1031700 Malus domestica
MD11G1180900 Malus domestica
Medtr2g084355 Medicago truncatula
Medtr3g006760 Medicago truncatula
Medtr8g043980 Medicago truncatula
MELO3C015627.2 Cucumis melo
Migut.D00714 Erythranthe guttata
Migut.N02418 Erythranthe guttata
MSTRG.12411 Avicennia marina
MSTRG.17661 Avicennia marina
Nitab4.5_0000428g0160 Nicotiana tabacum
Nitab4.5_0002300g0140 Nicotiana tabacum
Nn7g37294 Nelumbo nucifera
Oeu022227.1 Olea europaea
Oeu026659.2 Olea europaea
Os02g0149600 Oryza sativa ssp. japonica
Os06g0698859 Oryza sativa ssp. japonica
Os08g0517300 Oryza sativa ssp. japonica
Peaxi162Scf00342g00121 Petunia axillaris
Peaxi162Scf00526g00069 Petunia axillaris
PGR119G2033 Punica granatum
PGSC0003DMG400001490 Solanum tuberosum
Phvul.005G010800 Phaseolus vulgaris
Phvul.011G187000 Phaseolus vulgaris
Potri.004G196400 Populus trichocarpa
Potri.009G158600 Populus trichocarpa
Pp3c11_5370 Physcomitrium patens
Pp3c16_11390 Physcomitrium patens
Pp3c25_7680 Physcomitrium patens
PRCOL_00002552 Prasinoderma coloniale
Prupe.6G153800 Prunus persica
Psat4g168160 Pisum sativum
Psat5g230400 Pisum sativum
Psat7g090520 Pisum sativum
PSO339G2307 Papaver somniferum
PSO384G0529 Papaver somniferum
PSO675G8789 Papaver somniferum
PSO700G0324 Papaver somniferum
QL01p020379 Quercus lobata
QL04p050672 Quercus lobata
QL04p050688 Quercus lobata
RcHm_v2.0_Chr5g0049831 Rosa chinensis
Rhsim01G0196700 Rhododendron simsii
Sabra04G0133100 Salix brachista
Sabra09G0124100 Salix brachista
SalBow3G0543 Salvia bowleyana
Sc06g0008520 Simmondsia chinensis
Sc12g0000530 Simmondsia chinensis
Sed0018000 Sechium edule
Sed0025717 Sechium edule
SEGI_16115 Sequoiadendron giganteum
SGA_v2.0_scaffold16G07569 Striga asiatica
SGA_v2.0_scaffold79G25511 Striga asiatica
SHI25372 Sapria himalayana
SMO118G0495 Selaginella moellendorffii
Solyc01g009090.3 Solanum lycopersicum
Sopen01g004580 Solanum pennellii
Sp4g09770 Schrenkiella parvula
Sp4g09790 Schrenkiella parvula
SpUn0012_0040 Schrenkiella parvula
SpUn0012_0060 Schrenkiella parvula
SpUn0093_0010 Schrenkiella parvula
SpUn0093_0020 Schrenkiella parvula
SpUn0105_0010 Schrenkiella parvula
SpUn0105_0020 Schrenkiella parvula
SpUn0122_0010 Schrenkiella parvula
SpUn0154_0010 Schrenkiella parvula
SpUn0154_0020 Schrenkiella parvula
TAR633G2621 Trochodendron aralioides
TAR636G1985 Trochodendron aralioides
THA.LOC104801503 Tarenaya hassleriana
THA.LOC104816965 Tarenaya hassleriana
THA.LOC104826477 Tarenaya hassleriana
Thecc.09G337100 Theobroma cacao
Thhalv10001919m.g Eutrema salsugineum
Thhalv10001921m.g Eutrema salsugineum
TPR.G21474 Trifolium pratense
TPR.G22522 Trifolium pratense
TPR.G25034 Trifolium pratense
TPR.G25518 Trifolium pratense
TPR.G7794 Trifolium pratense
TWI31G0528 Tripterygium wilfordii
TWI75G1610 Tripterygium wilfordii
TWI79G1622 Tripterygium wilfordii
unitig_27.g25020 Utricularia gibba
unitig_699.g19168 Utricularia gibba
unitig_699.g19169 Utricularia gibba
vmacro14291 Vaccinium macrocarpon
VMungo1080G0204 Vigna mungo
VMungo1127G0582 Vigna mungo
Zm00001eb035820 Zea mays
Zm00001eb107860 Zea mays
Zm00001eb174730 Zea mays
Zm00001eb226730 Zea mays
Zm00001eb273040 Zea mays
Zm00001eb388700 Zea mays

User provided reference genes

Program Settings