Gene: AT2G27100

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G27100
  • Transcript Identifier AT2G27100.1
  • Gene Type Coding gene
  • Location Chr2 : 11572587-11576357 : positive

Gene Family Information

  • ID HOM05D003237
  • #Genes/#Species 212/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G27100.1
  • symbol SE
  • full_name SERRATE
  • uniprot Q9ZVD0

Descriptions

  • Description C2H2 zinc-finger protein SERRATE (SE)
  • Computational description SERRATE (SE); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 7 processes; LOCATED IN: cytosol, nuclear speck, nucleolus, nucleus, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Arsenite-resistance protein 2 (InterPro:IPR007042), Protein of unknown function DUF3546 (InterPro:IPR021933), Zinc finger, C2H2-type (InterPro:IPR007087); Has 5797 Blast hits to 4596 proteins in 474 species: Archae - 2; Bacteria - 583; Metazoa - 2822; Fungi - 981; Plants - 712; Viruses - 137; Other Eukaryotes - 560 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000381
IMP
Gene Ontologyregulation of alternative mRNA splicing, via spliceosome1
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0006397
IEA
InterPromRNA processing
GO:0031047
IEA
GOA Databasegene silencing by RNA
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0008380
IMP
Gene OntologyRNA splicing2
GO:0031053
IMP
IBA
Gene Ontologyprimary miRNA processing3 4
GO:0048367
IMP
Gene Ontologyshoot system development5
GO:0010267
IMP
Gene Ontologyproduction of ta-siRNAs involved in RNA interference3
GO:2000011
IMP
Gene Ontologyregulation of adaxial/abaxial pattern formation6
GO:0048509
IMP
Gene Ontologyregulation of meristem development6
GO:0006355
TAS
Gene Ontologyregulation of transcription, DNA-templated7

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0005515
IPI
Gene Ontologyprotein binding3
GO:0003677
ISS
Gene OntologyDNA binding7
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity8

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IDA
IEA
GOA Databasenucleus
GO:0005634
ISS
Gene Ontologynucleus7
GO:0005829
IDA
GOA Databasecytosol
GO:0005730
IDA
GOA Databasenucleolus
GO:0005730
HDA
Gene Ontologynucleolus9
GO:0016607
IEA
GOA Databasenuclear speck
GO:0016607
IDA
Gene Ontologynuclear speck10
GO:0016604
IBA
Gene Ontologynuclear body4
GO:0005846
IPI
Gene Ontologynuclear cap binding complex1
GO:0010445
IDA
Gene Ontologynuclear dicing body10

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007042 SERRATE/Ars2 , C-terminal
IPR039727 SERRATE/Ars2
IPR021933 SERRATE/Ars2, N-terminal
Mapman id Description
16.9.2.1.3 RNA processing.mRNA silencing.miRNA pathway.DCL1-HYL1 miRNA biogenesis complex.component SERRATE