Gene: Sopen01g004580

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g004580
  • Transcript Identifier Sopen01g004580.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 3438696-3451511 : negative

Gene Family Information

  • ID HOM05D003237
  • #Genes/#Species 212/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g004580.1

Descriptions

  • Description Identified as a leaf form mutant by Redei having serrated leaves. Further analysis of the single loss of function allele indicated pleiotropic effects extending to many aspects of shoot development such as taller meristems, alterations in phase transition, phyllotaxy and branching. Encodes a single zinc finger containing protein that is expressed in meristems and organ primordia. | SERRATE (SE) | FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: in 7 processes | LOCATED IN: cytosol, nuclear speck, nucleolus, nucleus, chloroplast | EXPRESSED IN: 27 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like , Arsenite-resistance protein 2 , Protein of unknown function DUF3546 , Zinc finger, C2H2-type
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
InterPromRNA processing
GO:0008380
ISO
PLAZA Integrative OrthologyRNA splicing AT2G27100
GO:0048509
ISO
PLAZA Integrative Orthologyregulation of meristem development AT2G27100
GO:0031053
ISO
PLAZA Integrative Orthologyprimary miRNA processing AT2G27100
GO:0006355
ISO
PLAZA Integrative Orthologyregulation of transcription, DNA-templated AT2G27100
GO:0048367
ISO
PLAZA Integrative Orthologyshoot system development AT2G27100
GO:0000381
ISO
PLAZA Integrative Orthologyregulation of alternative mRNA splicing, via spliceosome AT2G27100
GO:2000011
ISO
PLAZA Integrative Orthologyregulation of adaxial/abaxial pattern formation AT2G27100
GO:0010267
ISO
PLAZA Integrative Orthologyproduction of ta-siRNAs involved in RNA interference AT2G27100

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G27100

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT2G27100
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT2G27100
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G27100
GO:0005846
ISO
PLAZA Integrative Orthologynuclear cap binding complex AT2G27100
GO:0010445
ISO
PLAZA Integrative Orthologynuclear dicing body AT2G27100
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G27100

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007042 SERRATE/Ars2 , C-terminal
IPR021933 SERRATE/Ars2, N-terminal
IPR039727 SERRATE/Ars2
Mapman id Description
16.9.2.1.3 RNA processing.mRNA silencing.miRNA pathway.DCL1-HYL1 miRNA biogenesis complex.component SERRATE