Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p18810 Brassica napus
Aa31LG5G13420 Aethionema arabicum
Aa31LG7G11480 Aethionema arabicum
Aa31LG9G5620 Aethionema arabicum
Aa31sc15G40 Aethionema arabicum
Aa31sc15G50 Aethionema arabicum
Aa31sc15G60 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_340.1345 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.752 Anthoceros agrestis
Actinidia14753 Actinidia chinensis
Actinidia17316 Actinidia chinensis
Actinidia18150 Actinidia chinensis
Actinidia27010 Actinidia chinensis
Actinidia38632 Actinidia chinensis
Ah.10g033750 Amaranthus hybridus
Ah.11g043690 Amaranthus hybridus
Ah.14g083770 Amaranthus hybridus
AL3G12370 Arabidopsis lyrata
AL4G14970 Arabidopsis lyrata
Aqoxy7G03019 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.59XDTJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7IT8A8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CG00YF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R81B49 Arachis hypogaea
AT2G24490 Arabidopsis thaliana
AT3G02920 Arabidopsis thaliana
ATR0580G323 Amborella trichopoda
ATR0681G355 Amborella trichopoda
Atru.chr7.2627 Acer truncatum
Atru.chr7.608 Acer truncatum
AUR62009043 Chenopodium quinoa
AUR62020619 Chenopodium quinoa
AUR62021305 Chenopodium quinoa
AUR62033224 Chenopodium quinoa
AUR62038763 Chenopodium quinoa
BcaB04g21396 Brassica carinata
BcaB06g27981 Brassica carinata
BcaC02g08447 Brassica carinata
BcaNung03547 Brassica carinata
BNapus_Darmor_BZH_scaffold_129p00170 Brassica napus
BolC1t05863H Brassica oleracea
BolC4t26964H Brassica oleracea
BraA01t04606Z Brassica rapa
BraA04t17490Z Brassica rapa
C01p29460 Brassica napus
C04p54120 Brassica napus
CAN.G308.33 Capsicum annuum
CAN.G674.8 Capsicum annuum
CAN.G786.14 Capsicum annuum
CANSAT11G2497 Cannabis sativa
CARHR076950 Cardamine hirsuta
CARHR117540 Cardamine hirsuta
Carub.0003s0205 Capsella rubella
Carub.0004s0383 Capsella rubella
Ca_12874_v3 Cicer arietinum L.
Ca_21231_v3 Cicer arietinum L.
CBR_g17098 Chara braunii
Cc02_g31460 Coffea canephora
Cc06_g06720 Coffea canephora
Cc06_g13200 Coffea canephora
Cc11_g04580 Coffea canephora
CDE10G0012 Ceratophyllum demersum
CDE10G0114 Ceratophyllum demersum
CDE10G0351 Ceratophyllum demersum
CDE10G0899 Ceratophyllum demersum
Cfa013500 Carpinus fangiana
Ciclev10009139m.g Citrus clementina
Ciclev10009206m.g Citrus clementina
CiPaw.07G192700 Carya illinoinensis
CiPaw.08G018700 Carya illinoinensis
ClCG05G017480 Citrullus lanatus
ClCG06G013390 Citrullus lanatus
COL.COLO4_19047 Corchorus olitorius
COL.COLO4_37720 Corchorus olitorius
Cpa.g.c43525 Carica papaya
Cpa.g.sc1312.2 Carica papaya
Cpa.g.sc233.2 Carica papaya
Cre02.g100000 Chlamydomonas reinhardtii
CsaV3_1G031640 Cucumis sativus L.
CsaV3_3G046980 Cucumis sativus L.
CSS0047734 Camellia sinensis var. sinensis
CSS0050130 Camellia sinensis var. sinensis
DCAR_000664 Daucus carota
DCAR_020125 Daucus carota
Dinv04571 Davidia involucrata
Dinv09620 Davidia involucrata
Dinv41242 Davidia involucrata
Dinv42718 Davidia involucrata
Dinv43383 Davidia involucrata
Duzib150G0666 Durio zibethinus
Duzib168G0477 Durio zibethinus
ECA236G0567 Erigeron canadensis
EL10Ac2g03729 Beta vulgaris
EL10Ac8g18289 Beta vulgaris
Eucgr.C02095 Eucalyptus grandis
Eucgr.C02332 Eucalyptus grandis
FAN07G2623 Fragaria x ananassa
FAN12G3254 Fragaria x ananassa
FAN15G0233 Fragaria x ananassa
FAN20G1722 Fragaria x ananassa
FAN27G3346 Fragaria x ananassa
FvH4_2g36940 Fragaria vesca
FvH4_4g08140 Fragaria vesca
Glyma.13G096800 Glycine max
Glyma.14G133400 Glycine max
Glyma.17G062700 Glycine max
Glyma.17G202200 Glycine max
Gohir.A05G004300 Gossypium hirsutum
Gohir.A05G065400 Gossypium hirsutum
Gohir.A07G207100 Gossypium hirsutum
Gohir.A13G178000 Gossypium hirsutum
Gohir.D05G005100 Gossypium hirsutum
Gohir.D05G068000 Gossypium hirsutum
Gohir.D07G213300 Gossypium hirsutum
Gohir.D13G186100 Gossypium hirsutum
Gorai.009G005000 Gossypium raimondii
Gorai.009G068800 Gossypium raimondii
Gorai.013G212100 Gossypium raimondii
GSVIVG01029218001 Vitis vinifera
GSVIVG01035537001 Vitis vinifera
HanXRQChr01g0020741 Helianthus annuus
HanXRQChr05g0141971 Helianthus annuus
HanXRQChr05g0141981 Helianthus annuus
HanXRQChr05g0141991 Helianthus annuus
HanXRQChr05g0142001 Helianthus annuus
HanXRQChr11g0327551 Helianthus annuus
HanXRQChr12g0365421 Helianthus annuus
Haze_21713 Corylus avellana
Haze_21714 Corylus avellana
Haze_22088 Corylus avellana
Hma1.2p1_0155F.1_g068590 Hydrangea macrophylla
Hma1.2p1_0272F.1_g109190 Hydrangea macrophylla
Hma1.2p1_1025F.1_g249360 Hydrangea macrophylla
HPP92_005459 Vanilla planifolia
HPP92_018566 Vanilla planifolia
HPP92_022513 Vanilla planifolia
Hund03280 Selenicereus undatus
Hund20108 Selenicereus undatus
Hund26344 Selenicereus undatus
Lalb_Chr07g0180521 Lupinus albus
Lalb_Chr14g0362241 Lupinus albus
Lalb_Chr24g0402451 Lupinus albus
Lj1g0002656 Lotus japonicus
Lj4g0022723 Lotus japonicus
Lj5g0009231 Lotus japonicus
Lsat_1_v5_gn_1_95140 Lactuca sativa
Lsat_1_v5_gn_2_90001 Lactuca sativa
Lsat_1_v5_gn_4_112200 Lactuca sativa
Lsat_1_v5_gn_8_67780 Lactuca sativa
Manes.03G002500 Manihot esculenta
Manes.06G023550 Manihot esculenta
Mapoly0166s0018 Marchantia polymorpha
MBI14_g00419_MAGBIO Magnolia biondii
MBI14_g00420_MAGBIO Magnolia biondii
MBI14_g17381_MAGBIO Magnolia biondii
MBI16_g31783_MAGBIO Magnolia biondii
MCO16G215 Micromonas commoda
MD08G1131500 Malus domestica
MD08G1131600 Malus domestica
MD13G1252800 Malus domestica
MD15G1109200 Malus domestica
Medtr1g009890 Medicago truncatula
Medtr4g127950 Medicago truncatula
MELO3C003638.2 Cucumis melo
MELO3C017458.2 Cucumis melo
Migut.J00687 Erythranthe guttata
Migut.J01489 Erythranthe guttata
MSTRG.19298 Avicennia marina
MSTRG.19710 Avicennia marina
MSTRG.6145 Avicennia marina
MSTRG.6224 Avicennia marina
Nitab4.5_0002165g0040 Nicotiana tabacum
Nitab4.5_0004944g0050 Nicotiana tabacum
Nitab4.5_0005257g0030 Nicotiana tabacum
Nitab4.5_0006838g0010 Nicotiana tabacum
Nn8g38588 Nelumbo nucifera
Oeu009852.1 Olea europaea
Oeu017717.1 Olea europaea
Oeu028651.1 Olea europaea
Os02g0633400 Oryza sativa ssp. japonica
Os02g0829100 Oryza sativa ssp. japonica
Os06g0693300 Oryza sativa ssp. japonica
Peaxi162Scf00083g01924 Petunia axillaris
Peaxi162Scf00211g00232 Petunia axillaris
Peaxi162Scf00231g00728 Petunia axillaris
PGR044G1401 Punica granatum
PGR147G0008 Punica granatum
PGSC0003DMG400028143 Solanum tuberosum
PGSC0003DMG403013782 Solanum tuberosum
Phvul.001G058500 Phaseolus vulgaris
Phvul.003G145200 Phaseolus vulgaris
Potri.006G167600 Populus trichocarpa
Potri.006G272000 Populus trichocarpa
Potri.006G275700 Populus trichocarpa
Potri.018G091700 Populus trichocarpa
Pp3c26_14310 Physcomitrium patens
PRCOL_00000113 Prasinoderma coloniale
Prupe.1G085000 Prunus persica
Prupe.1G461400 Prunus persica
Psat0s312g0040 Pisum sativum
Psat5g275120 Pisum sativum
Psat6g007800 Pisum sativum
Psat6g007840 Pisum sativum
PSO063G0489 Papaver somniferum
PSO170G5347 Papaver somniferum
QL02p097865 Quercus lobata
QL12p024865 Quercus lobata
RcHm_v2.0_Chr4g0402271 Rosa chinensis
RcHm_v2.0_Chr6g0304821 Rosa chinensis
Rhsim03G0264700 Rhododendron simsii
Rhsim07G0137300 Rhododendron simsii
Sabra06G0213400 Salix brachista
Sabra18G0078800 Salix brachista
SalBow6G5526 Salvia bowleyana
Sc06g0001190 Simmondsia chinensis
Sc08g0005300 Simmondsia chinensis
Sed0008387 Sechium edule
Sed0020275 Sechium edule
Sed0024156 Sechium edule
SEGI_02581 Sequoiadendron giganteum
SEGI_13177 Sequoiadendron giganteum
SEGI_40064 Sequoiadendron giganteum
SGA_v2.0_scaffold13G06659 Striga asiatica
SGA_v2.0_scaffold66G22411 Striga asiatica
SMO340G0235 Selaginella moellendorffii
Solyc07g018300.3 Solanum lycopersicum
Solyc10g081830.3 Solanum lycopersicum
Sopen07g007450 Solanum pennellii
Sopen10g032350 Solanum pennellii
Sp3g01980 Schrenkiella parvula
Sp4g03490 Schrenkiella parvula
TAR383G0981 Trochodendron aralioides
TAR626G0658 Trochodendron aralioides
THA.LOC104802929 Tarenaya hassleriana
THA.LOC104803594 Tarenaya hassleriana
Thecc.09G005900 Theobroma cacao
Thecc.09G176600 Theobroma cacao
Thhalv10000282m.g Eutrema salsugineum
Thhalv10021296m.g Eutrema salsugineum
TPR.G12058 Trifolium pratense
TPR.G5425 Trifolium pratense
TWI32G1170 Tripterygium wilfordii
TWI63G0385 Tripterygium wilfordii
unitig_0.g575 Utricularia gibba
unitig_22.g5140 Utricularia gibba
vmacro06011 Vaccinium macrocarpon
vmacro14225 Vaccinium macrocarpon
VMungo0647G0359 Vigna mungo
VMungo1215G1050 Vigna mungo
Zm00001eb226220 Zea mays
Zm00001eb248070 Zea mays
Zm00001eb259380 Zea mays
Zm00001eb273330 Zea mays

User provided reference genes

Program Settings