Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p35990 Brassica napus
A05p00390 Brassica napus
Aa31LG3G1860 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.5644 Anthoceros agrestis
Actinidia07964 Actinidia chinensis
Actinidia09431 Actinidia chinensis
Actinidia39727 Actinidia chinensis
Actinidia39734 Actinidia chinensis
Ah.04g159560 Amaranthus hybridus
AL2G39140 Arabidopsis lyrata
AL357U10010 Arabidopsis lyrata
AL357U10020 Arabidopsis lyrata
AL3G20510 Arabidopsis lyrata
AL4G44180 Arabidopsis lyrata
AL4G44190 Arabidopsis lyrata
AL5G10240 Arabidopsis lyrata
Aqoxy4G00023 Aquilegia oxysepala
Aqoxy4G00362 Aquilegia oxysepala
Aqoxy5G01199 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.9I2R1K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LW5WEF Arachis hypogaea
AT1G30455 Arabidopsis thaliana
AT2G01280 Arabidopsis thaliana
AT2G45100 Arabidopsis thaliana
AT3G09360 Arabidopsis thaliana
ATR0697G089 Amborella trichopoda
Atru.chr2.1532 Acer truncatum
Atru.chr2.1533 Acer truncatum
Atru.chr2.91 Acer truncatum
AUR62005908 Chenopodium quinoa
AUR62028157 Chenopodium quinoa
BcaB02g08778 Brassica carinata
BcaB02g08781 Brassica carinata
BcaB03g11605 Brassica carinata
BcaB03g11606 Brassica carinata
BcaC01g04231 Brassica carinata
BcaC02g11927 Brassica carinata
BcaC02g12571 Brassica carinata
BolC3t16631H Brassica oleracea
BolC4t21688H Brassica oleracea
BolC4t22589H Brassica oleracea
BraA03t12771Z Brassica rapa
BraA05t19037Z Brassica rapa
C03p43620 Brassica napus
C04p00530 Brassica napus
C04p09810 Brassica napus
CAN.G388.55 Capsicum annuum
CAN.G756.30 Capsicum annuum
CANSAT80G1653 Cannabis sativa
CANSAT80G2236 Cannabis sativa
CARHR083720 Cardamine hirsuta
CARHR248300 Cardamine hirsuta
Carub.0002s0029 Capsella rubella
Carub.0002s1026 Capsella rubella
Carub.0003s0847 Capsella rubella
Ca_04466_v3 Cicer arietinum L.
Ca_08320_v3 Cicer arietinum L.
Ca_08321_v3 Cicer arietinum L.
CBR_g30840 Chara braunii
CBR_g31712 Chara braunii
Cc02_g13440 Coffea canephora
CDE02G4627 Ceratophyllum demersum
CDE10G0041 Ceratophyllum demersum
Cfa006401 Carpinus fangiana
Ciclev10019321m.g Citrus clementina
CiPaw.08G118400 Carya illinoinensis
CiPaw.15G041500 Carya illinoinensis
ClCG03G016660 Citrullus lanatus
ClCG11G015790 Citrullus lanatus
COL.COLO4_20084 Corchorus olitorius
Cpa.g.c27574 Carica papaya
Cpa.g.sc1400.2 Carica papaya
Cre06.g256420 Chlamydomonas reinhardtii
CsaV3_1G039340 Cucumis sativus L.
CsaV3_4G028190 Cucumis sativus L.
CSS0039994 Camellia sinensis var. sinensis
DCAR_013573 Daucus carota
DCAR_015631 Daucus carota
DCAR_026750 Daucus carota
DCAR_026751 Daucus carota
DCAR_028213 Daucus carota
DCAR_031564 Daucus carota
Dinv17311 Davidia involucrata
Dinv17316 Davidia involucrata
Dinv25037 Davidia involucrata
Duzib128G1433 Durio zibethinus
ECA233G5179 Erigeron canadensis
ECA233G5306 Erigeron canadensis
EL10Ac3g05092 Beta vulgaris
Eucgr.A02144 Eucalyptus grandis
FAN01G1797 Fragaria x ananassa
FAN03G1493 Fragaria x ananassa
FAN06G1703 Fragaria x ananassa
FAN06G3121 Fragaria x ananassa
FAN07G2025 Fragaria x ananassa
FAN08G0285 Fragaria x ananassa
FAN10G1124 Fragaria x ananassa
FAN12G2138 Fragaria x ananassa
FAN12G2960 Fragaria x ananassa
FAN13G2753 Fragaria x ananassa
FAN17G2691 Fragaria x ananassa
FAN18G3773 Fragaria x ananassa
FvH4_4g11810 Fragaria vesca
FvH4_5g32090 Fragaria vesca
FvH4_7g06230 Fragaria vesca
Glyma.01G125500 Glycine max
Glyma.04G104850 Glycine max
Glyma.09G056950 Glycine max
Glyma.16G035400 Glycine max
Glyma.19G117700 Glycine max
Gohir.A11G164500 Gossypium hirsutum
Gohir.A13G160900 Gossypium hirsutum
Gohir.D03G093500 Gossypium hirsutum
Gohir.D06G154500 Gossypium hirsutum
Gohir.D06G171600 Gossypium hirsutum
Gohir.D09G053232 Gossypium hirsutum
Gohir.D11G170800 Gossypium hirsutum
Gohir.D11G201533 Gossypium hirsutum
Gohir.D11G258032 Gossypium hirsutum
Gohir.D13G166200 Gossypium hirsutum
Gorai.001G205000 Gossypium raimondii
Gorai.001G250500 Gossypium raimondii
Gorai.002G122000 Gossypium raimondii
Gorai.003G097500 Gossypium raimondii
Gorai.007G182800 Gossypium raimondii
Gorai.007G216000 Gossypium raimondii
Gorai.008G258600 Gossypium raimondii
Gorai.012G059100 Gossypium raimondii
Gorai.013G196300 Gossypium raimondii
GSVIVG01029946001 Vitis vinifera
HanXRQChr04g0118861 Helianthus annuus
HanXRQChr04g0123841 Helianthus annuus
Haze_06435 Corylus avellana
Haze_06436 Corylus avellana
Haze_20120 Corylus avellana
Hma1.2p1_2499F.1_g323360 Hydrangea macrophylla
HPP92_004334 Vanilla planifolia
HPP92_016841 Vanilla planifolia
Hund21093 Selenicereus undatus
Lalb_Chr02g0157411 Lupinus albus
Lalb_Chr02g0157421 Lupinus albus
Lalb_Chr14g0370781 Lupinus albus
Lj1A1070T36 Lonicera japonica
Lj1A1071G54 Lonicera japonica
Lj1A1071T60 Lonicera japonica
Lj2g0010098 Lotus japonicus
Lj2g0020942 Lotus japonicus
Lj4g0005434 Lotus japonicus
Lj4g0025158 Lotus japonicus
Lj5g0018535 Lotus japonicus
Lsat_1_v5_gn_1_126300 Lactuca sativa
Manes.08G152300 Manihot esculenta
Mapoly0001s0017 Marchantia polymorpha
MBI17_g29780_MAGBIO Magnolia biondii
MCO16G125 Micromonas commoda
MD04G1033900 Malus domestica
Medtr6g027510 Medicago truncatula
Medtr7g086730 Medicago truncatula
MELO3C015360.2 Cucumis melo
MELO3C032627.2 Cucumis melo
Migut.K00214 Erythranthe guttata
Nitab4.5_0000175g0200 Nicotiana tabacum
Nitab4.5_0000322g0190 Nicotiana tabacum
Nitab4.5_0000563g0080 Nicotiana tabacum
Nitab4.5_0002341g0020 Nicotiana tabacum
Nitab4.5_0003719g0060 Nicotiana tabacum
Nitab4.5_0004196g0010 Nicotiana tabacum
Nitab4.5_0015985g0010 Nicotiana tabacum
Nn7g37357 Nelumbo nucifera
Oeu024618.1 Olea europaea
Oeu044210.1 Olea europaea
Oeu057252.1 Olea europaea
Os05g0305100 Oryza sativa ssp. japonica
Peaxi162Scf00793g00323 Petunia axillaris
Peaxi162Scf00793g00338 Petunia axillaris
Peaxi162Scf00978g00036 Petunia axillaris
PGR031G3358 Punica granatum
PGR042G0279 Punica granatum
PGSC0003DMG400021379 Solanum tuberosum
Phvul.001G053501 Phaseolus vulgaris
Phvul.001G106000 Phaseolus vulgaris
Phvul.001G106433 Phaseolus vulgaris
Potri.001G246100 Populus trichocarpa
Potri.009G039100 Populus trichocarpa
Pp3c8_20180 Physcomitrium patens
PRCOL_00005646 Prasinoderma coloniale
Prupe.1G180700 Prunus persica
Prupe.4G048300 Prunus persica
Psat1g089240 Pisum sativum
Psat3g086160 Pisum sativum
Psat3g086200 Pisum sativum
Psat3g086240 Pisum sativum
Psat5g080560 Pisum sativum
PSO170G0409 Papaver somniferum
PSO210G0347 Papaver somniferum
PSO832G1528 Papaver somniferum
QL05p014746 Quercus lobata
QL05p040799 Quercus lobata
QL05p040842 Quercus lobata
QL05p040855 Quercus lobata
RcHm_v2.0_Chr4g0409121 Rosa chinensis
RcHm_v2.0_Chr7g0228131 Rosa chinensis
Rhsim05G0035300 Rhododendron simsii
Sabra16G0149300 Salix brachista
SalBow2G1241 Salvia bowleyana
Sc13g0009820 Simmondsia chinensis
Sc25g0001160 Simmondsia chinensis
Sed0008593 Sechium edule
Sed0020965 Sechium edule
SEGI_08707 Sequoiadendron giganteum
SEGI_11244 Sequoiadendron giganteum
SEGI_15412 Sequoiadendron giganteum
SEGI_32455 Sequoiadendron giganteum
SGA_v2.0_scaffold17G07984 Striga asiatica
SHI21356 Sapria himalayana
SHI21361 Sapria himalayana
SMO117G0141 Selaginella moellendorffii
SMO196G0286 Selaginella moellendorffii
Solyc01g088720.3 Solanum lycopersicum
Sopen01g035560 Solanum pennellii
Sp1g06510 Schrenkiella parvula
Sp3g07740 Schrenkiella parvula
Sp7g13230 Schrenkiella parvula
TAR636G0479 Trochodendron aralioides
THA.LOC104816256 Tarenaya hassleriana
Thecc.05G241000 Theobroma cacao
Thhalv10011362m.g Eutrema salsugineum
Thhalv10020503m.g Eutrema salsugineum
Thhalv10027195m.g Eutrema salsugineum
TPR.G16468 Trifolium pratense
TPR.G22032 Trifolium pratense
TPR.G34790 Trifolium pratense
TPR.G34933 Trifolium pratense
TPR.G35742 Trifolium pratense
TPR.G9529 Trifolium pratense
TPR.G9547 Trifolium pratense
TWI60G0137 Tripterygium wilfordii
unitig_748.g8246 Utricularia gibba
vmacro10812 Vaccinium macrocarpon
vmacro18115 Vaccinium macrocarpon
vmacro20470 Vaccinium macrocarpon
VMungo1383G1676 Vigna mungo
VMungo1383G1677 Vigna mungo
VMungo1383G3011 Vigna mungo
VMungo1383G3234 Vigna mungo
Zm00001eb028910 Zea mays
Zm00001eb190030 Zea mays
Zm00001eb210060 Zea mays
Zm00001eb210070 Zea mays
Zm00001eb294450 Zea mays
Zm00001eb294470 Zea mays
Zm00001eb304800 Zea mays
Zm00001eb342490 Zea mays
Zm00001eb367360 Zea mays

User provided reference genes

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