Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p25950 Brassica napus
A07p09930 Brassica napus
A08p11020 Brassica napus
A08p24440 Brassica napus
Aa31LG10G6630 Aethionema arabicum
Aa31LG9G10500 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.4357 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.535 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.1691 Anthoceros agrestis
Actinidia02064 Actinidia chinensis
Actinidia32368 Actinidia chinensis
Ah.12g057910 Amaranthus hybridus
Ah.14g086150 Amaranthus hybridus
AL1G44410 Arabidopsis lyrata
AL6G46740 Arabidopsis lyrata
Aqoxy1G01608 Aquilegia oxysepala
Aqoxy1G01609 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.9EB9RH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NNP0DQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TXC2DL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XVC3D4 Arachis hypogaea
AT1G30460 Arabidopsis thaliana
AT4G11970 Arabidopsis thaliana
ATR0165G057 Amborella trichopoda
ATR0661G384 Amborella trichopoda
Atru.chr10.891 Acer truncatum
Atru.chr9.1493 Acer truncatum
AUR62010554 Chenopodium quinoa
AUR62017337 Chenopodium quinoa
AUR62017338 Chenopodium quinoa
AUR62042032 Chenopodium quinoa
AUR62042459 Chenopodium quinoa
AUR62042460 Chenopodium quinoa
BcaB03g13827 Brassica carinata
BcaB03g13828 Brassica carinata
BcaB05g23778 Brassica carinata
BcaC01g00193 Brassica carinata
BcaC03g16321 Brassica carinata
BcaNung05261 Brassica carinata
BolC2t10155H Brassica oleracea
BolC3t19931H Brassica oleracea
BolC7t42017H Brassica oleracea
BraA07t28782Z Brassica rapa
BraA08t34399Z Brassica rapa
BraA08t34401Z Brassica rapa
C02p41350 Brassica napus
C02p41360 Brassica napus
C03p76770 Brassica napus
C07p15130 Brassica napus
CAN.G1394.11 Capsicum annuum
CAN.G1394.12 Capsicum annuum
CAN.G660.45 Capsicum annuum
CANSAT21G0112 Cannabis sativa
CANSAT35G0839 Cannabis sativa
CARHR029850 Cardamine hirsuta
CARHR254320 Cardamine hirsuta
Carub.0001s2865 Capsella rubella
Carub.0006s3107 Capsella rubella
Ca_00801_v3 Cicer arietinum L.
Ca_06672_v3 Cicer arietinum L.
CBR_g11088 Chara braunii
CBR_g9036 Chara braunii
Cc08_g13680 Coffea canephora
CDE04G1060 Ceratophyllum demersum
CDE12G0823 Ceratophyllum demersum
Cfa000830 Carpinus fangiana
Cfa000832 Carpinus fangiana
Cfa027016 Carpinus fangiana
Ciclev10014454m.g Citrus clementina
Ciclev10020457m.g Citrus clementina
CiPaw.09G115900 Carya illinoinensis
CiPaw.10G086100 Carya illinoinensis
CiPaw.11G143500 Carya illinoinensis
CiPaw.12G101300 Carya illinoinensis
ClCG03G006290 Citrullus lanatus
ClCG08G001630 Citrullus lanatus
COL.COLO4_17684 Corchorus olitorius
COL.COLO4_23808 Corchorus olitorius
Cpa.g.c34894 Carica papaya
Cpa.g.sc17.104 Carica papaya
Cpa.g.sc29.42 Carica papaya
Cpa.g.sc3473.1 Carica papaya
Cre12.g516400 Chlamydomonas reinhardtii
Cre24.g755647 Chlamydomonas reinhardtii
CsaV3_1G037370 Cucumis sativus L.
CsaV3_1G037380 Cucumis sativus L.
CsaV3_3G031810 Cucumis sativus L.
CsaV3_5G039520 Cucumis sativus L.
CSS0024768 Camellia sinensis var. sinensis
CSS0044732 Camellia sinensis var. sinensis
DCAR_000889 Daucus carota
DCAR_003862 Daucus carota
DCAR_007846 Daucus carota
DCAR_007847 Daucus carota
Dinv15926 Davidia involucrata
Dinv37714 Davidia involucrata
Dinv39040 Davidia involucrata
Duzib084G0931 Durio zibethinus
Duzib132G0834 Durio zibethinus
Duzib205G0788 Durio zibethinus
ECA234G2820 Erigeron canadensis
ECA236G0560 Erigeron canadensis
EL10Ac5g12677 Beta vulgaris
EL10Ac8g19577 Beta vulgaris
Eucgr.D01949 Eucalyptus grandis
Eucgr.E02496 Eucalyptus grandis
FAN11G1563 Fragaria x ananassa
FAN13G1584 Fragaria x ananassa
FAN16G3174 Fragaria x ananassa
FAN18G0054 Fragaria x ananassa
FAN21G3939 Fragaria x ananassa
FAN25G1940 Fragaria x ananassa
FvH4_3g09980 Fragaria vesca
FvH4_5g01140 Fragaria vesca
Glyma.01G214100 Glycine max
Glyma.09G022200 Glycine max
Glyma.11G027800 Glycine max
Glyma.15G128500 Glycine max
Gohir.A08G176300 Gossypium hirsutum
Gohir.A12G045500 Gossypium hirsutum
Gohir.D08G195000 Gossypium hirsutum
Gohir.D12G044500 Gossypium hirsutum
Gorai.004G205800 Gossypium raimondii
Gorai.008G046800 Gossypium raimondii
GSVIVG01019895001 Vitis vinifera
GSVIVG01021617001 Vitis vinifera
HanXRQChr06g0165201 Helianthus annuus
HanXRQChr15g0480931 Helianthus annuus
Haze_05773 Corylus avellana
Haze_08994 Corylus avellana
HPP92_015677 Vanilla planifolia
HPP92_016574 Vanilla planifolia
Hund26562 Selenicereus undatus
Lalb_Chr05g0225491 Lupinus albus
Lalb_Chr15g0088721 Lupinus albus
Lalb_Chr16g0389701 Lupinus albus
Lalb_Chr18g0057871 Lupinus albus
Lj2A203T52 Lonicera japonica
Lj2C328G3 Lonicera japonica
Lj2g0008902 Lotus japonicus
Lj6g0003051 Lotus japonicus
Lsat_1_v5_gn_3_4560 Lactuca sativa
Lsat_1_v5_gn_4_29061 Lactuca sativa
Lsat_1_v5_gn_7_29481 Lactuca sativa
Manes.02G029400 Manihot esculenta
Manes.06G055600 Manihot esculenta
Manes.14G122500 Manihot esculenta
Mapoly0007s0039 Marchantia polymorpha
Mapoly0056s0030 Marchantia polymorpha
MBI18_g10583_MAGBIO Magnolia biondii
MCO01G443 Micromonas commoda
MD05G1274200 Malus domestica
MD06G1069100 Malus domestica
MD06G1069200 Malus domestica
MD10G1253900 Malus domestica
Medtr2g029540 Medicago truncatula
MELO3C002805.2 Cucumis melo
MELO3C022129.2 Cucumis melo
MELO3C028743.2 Cucumis melo
MELO3C030607.2 Cucumis melo
Migut.A00893 Erythranthe guttata
Migut.H01337 Erythranthe guttata
Migut.M01886 Erythranthe guttata
MSTRG.12035 Avicennia marina
MSTRG.16286 Avicennia marina
Nitab4.5_0000100g0020 Nicotiana tabacum
Nitab4.5_0000607g0100 Nicotiana tabacum
Nitab4.5_0001181g0060 Nicotiana tabacum
Nitab4.5_0001200g0030 Nicotiana tabacum
Nitab4.5_0002886g0080 Nicotiana tabacum
Nitab4.5_0011416g0020 Nicotiana tabacum
Nn1g01147 Nelumbo nucifera
Nn3g20245 Nelumbo nucifera
Oeu040251.1 Olea europaea
Oeu048761.1 Olea europaea
Oeu058474.2 Olea europaea
Oeu060303.1 Olea europaea
Os06g0677700 Oryza sativa ssp. japonica
Peaxi162Scf00102g01348 Petunia axillaris
Peaxi162Scf00155g00068 Petunia axillaris
PGR031G1950 Punica granatum
PGR031G3842 Punica granatum
PGSC0003DMG400012521 Solanum tuberosum
PGSC0003DMG400021104 Solanum tuberosum
Phvul.002G152600 Phaseolus vulgaris
Phvul.006G130200 Phaseolus vulgaris
Potri.001G113500 Populus trichocarpa
Potri.001G357800 Populus trichocarpa
Potri.011G089901 Populus trichocarpa
Pp3c20_9290 Physcomitrium patens
Pp3c8_11880 Physcomitrium patens
PRCOL_00005787 Prasinoderma coloniale
PRCOL_00006800 Prasinoderma coloniale
Prupe.4G089500 Prunus persica
Prupe.5G086300 Prunus persica
Psat1g168520 Pisum sativum
PSO063G4047 Papaver somniferum
PSO541G0016 Papaver somniferum
PSO675G8993 Papaver somniferum
PSO782G0365 Papaver somniferum
QL05p053241 Quercus lobata
QL12p016222 Quercus lobata
RcHm_v2.0_Chr5g0015731 Rosa chinensis
RcHm_v2.0_Chr5g0015861 Rosa chinensis
RcHm_v2.0_Chr7g0199981 Rosa chinensis
RcHm_v2.0_Chr7g0200101 Rosa chinensis
Rhsim13G0120100 Rhododendron simsii
Sabra01G0086700 Salix brachista
Sabra11G0073400 Salix brachista
Sabra11G0078900 Salix brachista
Sabra11G0079000 Salix brachista
Sabra16G0235600 Salix brachista
SalBow6G1657 Salvia bowleyana
SalBow7G2713 Salvia bowleyana
Sc01g0008950 Simmondsia chinensis
Sc24g0001450 Simmondsia chinensis
Sed0021012 Sechium edule
Sed0027591 Sechium edule
SEGI_04190 Sequoiadendron giganteum
SEGI_12754 Sequoiadendron giganteum
SEGI_22079 Sequoiadendron giganteum
SGA_v2.0_scaffold146G36215 Striga asiatica
SGA_v2.0_scaffold51G18649 Striga asiatica
SMO364G0768 Selaginella moellendorffii
Solyc02g021760.3 Solanum lycopersicum
Solyc02g070240.3 Solanum lycopersicum
Solyc08g007730.2 Solanum lycopersicum
Solyc08g007750.4 Solanum lycopersicum
Solyc08g007760.3 Solanum lycopersicum
Sopen02g006300 Solanum pennellii
Sopen02g019330 Solanum pennellii
Sopen08g003670 Solanum pennellii
Sopen08g003680 Solanum pennellii
Sopen08g003690 Solanum pennellii
Sp1g26280 Schrenkiella parvula
Sp6g05540 Schrenkiella parvula
TAR626G1080 Trochodendron aralioides
TAR627G0656 Trochodendron aralioides
TAR629G2075 Trochodendron aralioides
THA.LOC104798605 Tarenaya hassleriana
THA.LOC104814099 Tarenaya hassleriana
Thecc.02G012500 Theobroma cacao
Thecc.03G266900 Theobroma cacao
Thhalv10007064m.g Eutrema salsugineum
Thhalv10029158m.g Eutrema salsugineum
TPR.G30088 Trifolium pratense
TWI09G1166 Tripterygium wilfordii
TWI60G0766 Tripterygium wilfordii
unitig_0.g927 Utricularia gibba
unitig_52.g17228 Utricularia gibba
unitig_61.g26082 Utricularia gibba
vmacro03397 Vaccinium macrocarpon
VMungo0540G2147 Vigna mungo
VMungo1215G2259 Vigna mungo
Zm00001eb224690 Zea mays
Zm00001eb273850 Zea mays

User provided reference genes

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