Gene: Solyc02g021760.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc02g021760.3
  • Transcript Identifier Solyc02g021760.3.1
  • Gene Type Coding gene
  • Location SL4.0ch02 : 22050745-22066461 : negative

Gene Family Information

  • ID HOM05D002690
  • #Genes/#Species 256/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc02g021760.3.1
  • uniprot A0A3Q7EXZ1
  • gene_id Solyc02g021760

Descriptions

  • Description Zinc finger transcription factor 16
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:2000031
ISO
PLAZA Integrative Orthologyregulation of salicylic acid mediated signaling pathway AT1G30460
GO:0031124
ISO
PLAZA Integrative OrthologymRNA 3'-end processing AT1G30460
GO:0006979
ISO
PLAZA Integrative Orthologyresponse to oxidative stress AT1G30460
GO:0006378
ISO
PLAZA Integrative OrthologymRNA polyadenylation AT1G30460
GO:0006396
ISO
PLAZA Integrative OrthologyRNA processing AT1G30460
GO:0043068
ISO
PLAZA Integrative Orthologypositive regulation of programmed cell death AT1G30460
GO:1900363
ISO
PLAZA Integrative Orthologyregulation of mRNA polyadenylation AT1G30460
GO:0034052
ISO
PLAZA Integrative Orthologypositive regulation of plant-type hypersensitive response AT1G30460
GO:0000398
IBA
GOA DatabasemRNA splicing, via spliceosome
GO:0000381
IBA
GOA Databaseregulation of alternative mRNA splicing, via spliceosome
GO:0048024
IBA
GOA Databaseregulation of mRNA splicing, via spliceosome

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004519
ISO
PLAZA Integrative Orthologyendonuclease activity AT1G30460
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G30460
GO:0005516
ISO
PLAZA Integrative Orthologycalmodulin binding AT1G30460
GO:0004521
ISO
PLAZA Integrative Orthologyendoribonuclease activity AT1G30460
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0046872
IEA
InterPrometal ion binding
GO:0003729
IBA
GOA DatabasemRNA binding
GO:1990247
IBA
GOA DatabaseN6-methyladenosine-containing RNA binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0003677
IEA
GOA DatabaseDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT1G30460
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G30460
GO:0005654
IBA
GOA Databasenucleoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000571 Zinc finger, CCCH-type
IPR007275 YTH domain
IPR036855 Zinc finger, CCCH-type superfamily
Mapman id Description
16.3.1.2.5 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.component CPSF30/Yth1