Gene: Sp1g26280

General Information

Structural Information

  • Species Schrenkiella parvula
  • Gene Identifier Sp1g26280
  • Transcript Identifier Sp1g26280.1
  • Gene Type Coding gene
  • Location ch1-1 : 9959906-9964524 : negative

Gene Family Information

  • ID HOM05D002690
  • #Genes/#Species 256/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Sp1g26280.v2.2
  • pacid 45096087

Descriptions

  • Description PTHR12357//PTHR12357:SF3 - YTH YT521-B HOMOLOGY DOMAIN-CONTAINING // FI21232P1
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031124
ISO
PLAZA Integrative OrthologymRNA 3'-end processing AT1G30460
GO:0006979
ISO
PLAZA Integrative Orthologyresponse to oxidative stress AT1G30460
GO:0006378
ISO
PLAZA Integrative OrthologymRNA polyadenylation AT1G30460
GO:0006396
ISO
PLAZA Integrative OrthologyRNA processing AT1G30460
GO:0043068
ISO
PLAZA Integrative Orthologypositive regulation of programmed cell death AT1G30460
GO:1900363
ISO
PLAZA Integrative Orthologyregulation of mRNA polyadenylation AT1G30460
GO:2000031
ISO
PLAZA Integrative Orthologyregulation of salicylic acid mediated signaling pathway AT1G30460
GO:0034052
ISO
PLAZA Integrative Orthologypositive regulation of plant-type hypersensitive response AT1G30460

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004521
ISO
PLAZA Integrative Orthologyendoribonuclease activity AT1G30460
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G30460
GO:0004519
ISO
PLAZA Integrative Orthologyendonuclease activity AT1G30460
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G30460
GO:0005516
ISO
PLAZA Integrative Orthologycalmodulin binding AT1G30460
GO:0003723
IEA
InterProRNA binding
GO:0046872
IEA
InterPrometal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT1G30460
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G30460

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007275 YTH domain
IPR000571 Zinc finger, CCCH-type
IPR036855 Zinc finger, CCCH-type superfamily
Mapman id Description
16.3.1.2.5 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.component CPSF30/Yth1