Gene: Pp3c20_9290

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c20_9290
  • Transcript Identifier Pp3c20_9290V3.6
  • Gene Type Coding gene
  • Location Chr20 : 5579605-5583992 : positive

Gene Family Information

  • ID HOM05D002690
  • #Genes/#Species 256/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c20_9290V3.6
  • pacid 32946948
  • alias Phypa_159145
  • alias Pp1s9_445V6
  • alias Phpat.020G038600
  • uniprot A0A2K1IUP2

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:2000031
IEA
GOA Databaseregulation of salicylic acid mediated signaling pathway
GO:0034052
IEA
GOA Databasepositive regulation of plant-type hypersensitive response
GO:0031124
IEA
GOA DatabasemRNA 3'-end processing
GO:0006979
IEA
GOA Databaseresponse to oxidative stress
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006378
IEA
GOA DatabasemRNA polyadenylation
GO:0043068
IEA
GOA Databasepositive regulation of programmed cell death
GO:1900363
IEA
GOA Databaseregulation of mRNA polyadenylation
GO:0000398
IBA
GOA DatabasemRNA splicing, via spliceosome
GO:0000381
IBA
GOA Databaseregulation of alternative mRNA splicing, via spliceosome
GO:0048024
IBA
GOA Databaseregulation of mRNA splicing, via spliceosome
GO:0090502
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G30460
GO:0005516
IEA
GOA Databasecalmodulin binding
GO:0003729
IBA
IEA
GOA DatabasemRNA binding
GO:0004519
IEA
GOA Databaseendonuclease activity
GO:0004521
IEA
GOA Databaseendoribonuclease activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:1990247
IBA
GOA DatabaseN6-methyladenosine-containing RNA binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0046872
IEA
InterPrometal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005654
IBA
GOA Databasenucleoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007275 YTH domain
IPR036855 Zinc finger, CCCH-type superfamily
IPR000571 Zinc finger, CCCH-type
Mapman id Description
16.3.1.2.5 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.component CPSF30/Yth1